Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
357e168a by Andreas Tille at 2021-05-24T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,75 +1,74 @@
-Last-Update: Mon, 24 May 2021 01:42:05 +0000
+Last-Update: Mon, 24 May 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {covid-19,imaging} |
- orthanc | 96 | {practice,imaging,covid-19} |
- gdcm | 55 | {imaging-dev} |
- orthanc-wsi | 50 | {imaging,laboratory,practice,his,covid-19,oncology} |
- nipype | 30 | {imaging-dev,imaging} |
+ dcmtk | 181 | {imaging,covid-19} |
+ orthanc | 95 | {practice,imaging,covid-19} |
+ gdcm | 53 | {imaging-dev} |
+ orthanc-wsi | 49 | {oncology,his,imaging,covid-19,practice,laboratory} |
amide | 29 | {imaging} |
dicom3tools | 28 | {imaging} |
- htsjdk | 28 | {bio-dev} |
- dicomscope | 26 | {imaging} |
- dcm2niix | 23 | {imaging} |
- gdcm | 21 | {covid-19,imaging} |
+ dicomscope | 28 | {imaging} |
+ nipype | 28 | {imaging,imaging-dev} |
+ htsjdk | 27 | {bio-dev} |
+ dcm2niix | 22 | {imaging} |
+ gdcm | 21 | {imaging,covid-19} |
gdcm | 20 | {imaging-dev} |
openslide | 18 | {imaging} |
odin | 17 | {imaging-dev,imaging} |
gnumed-server | 15 | {covid-19,practice} |
- ngs-sdk | 15 | {bio-dev} |
+ minc-tools | 15 | {imaging} |
invesalius | 14 | {imaging} |
- minc-tools | 14 | {imaging} |
- orthanc-webviewer | 14 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
+ nifticlib | 14 | {imaging} |
pixelmed | 14 | {imaging} |
- nifticlib | 13 | {imaging} |
+ orthanc-webviewer | 13 | {imaging} |
dicomnifti | 12 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
plastimatch | 11 | {imaging} |
- vtk-dicom | 10 | {imaging} |
- insighttoolkit4 | 9 | {imaging-dev} |
+ ngs-sdk | 10 | {bio-dev} |
king | 9 | {imaging,typesetting} |
mia | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
+ insighttoolkit4 | 8 | {imaging-dev} |
+ ngs-sdk | 8 | {bio-dev} |
openslide | 8 | {imaging-dev} |
adun.app | 7 | {bio} |
- bamkit | 7 | {covid-19,bio} |
+ bamkit | 7 | {bio,covid-19} |
dicompyler | 7 | {oncology} |
- ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
nifti2dicom | 6 | {imaging} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
bart-view | 5 | {imaging} |
busco | 5 | {covid-19,bio} |
libminc | 5 | {imaging-dev} |
- melting | 5 | {bio,cloud} |
- orthanc-mysql | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
+ melting | 5 | {cloud,bio} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
salmid | 5 | {bio} |
- jebl2 | 4 | {bio-dev} |
librg-utils-perl | 4 | {bio} |
- oscar | 4 | {data,practice,tools} |
- salmon | 4 | {bio,covid-19} |
- treeview | 4 | {bio,bio-phylogeny} |
+ orthanc-mysql | 4 | {imaging} |
+ orthanc-postgresql | 4 | {imaging} |
+ oscar | 4 | {tools,practice,data} |
+ pymia | 4 | {imaging-dev} |
+ salmon | 4 | {covid-19,bio} |
+ treeview | 4 | {bio-phylogeny,bio} |
elastix | 3 | {imaging} |
getdata | 3 | {bio} |
+ jebl2 | 3 | {bio-dev} |
jellyfish1 | 3 | {bio} |
lagan | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
- pymia | 3 | {imaging-dev} |
runcircos-gui | 3 | {bio} |
stacks | 3 | {bio} |
staden | 3 | {bio} |
tracetuner | 3 | {bio} |
biojava-live | 2 | {bio-dev} |
biomaj3-cli | 2 | {cloud} |
- blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- cufflinks | 2 | {cloud,bio} |
+ cufflinks | 2 | {bio,cloud} |
ea-utils | 2 | {bio} |
embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {bio,cloud} |
+ embassy-domalign | 2 | {cloud,bio} |
ghmm | 2 | {bio} |
lamarc | 2 | {bio} |
libsbml | 2 | {bio-dev} |
@@ -80,18 +79,19 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
sift | 2 | {bio} |
sight | 2 | {imaging} |
anfo | 1 | {cloud,bio} |
- arden | 1 | {bio,cloud} |
+ arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
- beast-mcmc | 1 | {bio,bio-phylogeny} |
+ beast-mcmc | 1 | {bio-phylogeny,bio} |
bio-tradis | 1 | {bio-dev,bio} |
bitseq | 1 | {bio} |
+ blasr | 1 | {bio,bio-ngs} |
bustools | 1 | {bio,covid-19} |
canu | 1 | {bio} |
- clonalframeml | 1 | {bio,covid-19} |
+ clonalframeml | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- embassy-domsearch | 1 | {bio,cloud} |
+ embassy-domsearch | 1 | {cloud,bio} |
estscan | 1 | {bio} |
fastml | 1 | {bio} |
intake | 1 | {bio-dev,bio} |
@@ -111,7 +111,7 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
phyutility | 1 | {cloud,bio} |
pique | 1 | {bio} |
placnet | 1 | {bio} |
- prime-phylo | 1 | {bio,cloud} |
+ prime-phylo | 1 | {cloud,bio} |
python-bcbio-gff | 1 | {bio-dev} |
qcumber | 1 | {bio} |
quorum | 1 | {bio} |
@@ -121,17 +121,18 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
segemehl | 1 | {bio} |
sibsim4 | 1 | {cloud,bio} |
simpleitk | 1 | {imaging-dev} |
- spaln | 1 | {covid-19,bio} |
- spread-phy | 1 | {bio-phylogeny,bio} |
- vienna-rna | 1 | {covid-19,bio} |
+ simrisc | 1 | {oncology} |
+ spaln | 1 | {bio,covid-19} |
+ spread-phy | 1 | {bio,bio-phylogeny} |
+ vienna-rna | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
- bbmap | 0 | {bio,covid-19} |
+ bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- delly | 0 | {bio,covid-19} |
+ delly | 0 | {covid-19,bio} |
dextractor | 0 | {covid-19,bio} |
ecopcr | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
@@ -139,12 +140,12 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
fsm-lite | 0 | {bio} |
- gatb-core | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
+ gatb-core | 0 | {bio} |
gifticlib | 0 | {imaging-dev} |
hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
- jmodeltest | 0 | {bio-phylogeny,bio} |
+ jmodeltest | 0 | {bio,bio-phylogeny} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -187,21 +188,21 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- paraclu | 0 | {bio,cloud} |
+ paraclu | 0 | {cloud,bio} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- perm | 0 | {cloud,bio} |
+ perm | 0 | {bio,cloud} |
pigx-rnaseq | 0 | {bio,covid-19} |
piler | 0 | {bio} |
pilercr | 0 | {bio} |
plasmidseeker | 0 | {bio} |
- pplacer | 0 | {bio-phylogeny,covid-19,bio} |
+ pplacer | 0 | {bio,covid-19,bio-phylogeny} |
proalign | 0 | {bio-phylogeny,bio} |
pscan-chip | 0 | {bio} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
rdp-alignment | 0 | {bio} |
@@ -209,16 +210,15 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
resfinder-db | 0 | {bio} |
rtax | 0 | {cloud,bio} |
sambamba | 0 | {bio} |
- samblaster | 0 | {covid-19,bio} |
+ samblaster | 0 | {bio,covid-19} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
sga | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
- simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
soapaligner | 0 | {bio} |
soapsnp | 0 | {bio} |
spaced | 0 | {bio} |
@@ -227,17 +227,17 @@ Last-Update: Mon, 24 May 2021 01:42:05 +0000
suitename | 0 | {bio} |
surankco | 0 | {bio} |
svim | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
tvc | 0 | {bio} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
yaha | 0 | {bio} |
- yanagiba | 0 | {bio,covid-19} |
- zalign | 0 | {bio,cloud} |
+ yanagiba | 0 | {covid-19,bio} |
+ zalign | 0 | {cloud,bio} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
(270 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/357e168af234a55fb78902452b0c3fc2f8b77dd5
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/357e168af234a55fb78902452b0c3fc2f8b77dd5
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210524/bb8d0dcc/attachment-0001.htm>