Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a4011333 by Andreas Tille at 2021-11-04T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,114 +1,125 @@
-Last-Update: Thu, 04 Nov 2021 01:42:04 +0000
+Last-Update: Thu, 04 Nov 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {covid-19,imaging} |
- orthanc | 102 | {imaging,covid-19,practice} |
- orthanc-wsi | 55 | {imaging,practice,oncology,laboratory,his,covid-19} |
- htsjdk | 30 | {bio-dev} |
- nipype | 29 | {imaging,imaging-dev} |
- gdcm | 27 | {imaging-dev} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 100 | {imaging,covid-19,practice} |
+ orthanc-wsi | 54 | {imaging,covid-19,laboratory,oncology,practice,his} |
+ htsjdk | 32 | {bio-dev} |
+ nipype | 31 | {imaging,imaging-dev} |
+ gdcm | 28 | {imaging-dev} |
+ amide | 26 | {imaging} |
dicom3tools | 25 | {imaging} |
- amide | 24 | {imaging} |
+ mrtrix3 | 24 | {imaging} |
openslide | 24 | {imaging} |
- mrtrix3 | 23 | {imaging} |
dicomscope | 22 | {imaging} |
- odin | 20 | {imaging-dev,imaging} |
- invesalius | 19 | {imaging} |
- dcm2niix | 16 | {imaging} |
+ invesalius | 20 | {imaging} |
+ odin | 18 | {imaging-dev,imaging} |
+ dcm2niix | 15 | {imaging} |
minc-tools | 15 | {imaging} |
- orthanc-webviewer | 15 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
+ orthanc-webviewer | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- gdcm | 12 | {imaging,covid-19} |
- gnumed-server | 12 | {practice,covid-19} |
+ gdcm | 12 | {covid-19,imaging} |
+ gnumed-server | 12 | {covid-19,practice} |
+ adun.app | 11 | {bio} |
dicomnifti | 11 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- ngs-sdk | 11 | {bio-dev} |
nifticlib | 11 | {imaging} |
pixelmed | 11 | {imaging} |
- adun.app | 10 | {bio} |
nifti2dicom | 10 | {imaging} |
+ salmon | 10 | {covid-19,bio} |
mia | 9 | {imaging} |
- salmon | 9 | {bio,covid-19} |
- orthanc-dicomweb | 8 | {imaging,covid-19} |
+ ngs-sdk | 9 | {bio-dev} |
plastimatch | 8 | {imaging} |
- king | 7 | {typesetting,imaging} |
+ jebl2 | 7 | {bio-dev} |
+ king | 7 | {imaging,typesetting} |
+ lagan | 7 | {bio} |
libminc | 7 | {imaging-dev} |
ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- jebl2 | 6 | {bio-dev} |
- lagan | 6 | {bio} |
- orthanc-gdcm | 6 | {imaging} |
- orthanc-mysql | 6 | {imaging} |
+ orthanc-dicomweb | 7 | {covid-19,imaging} |
+ oscar | 7 | {tools,data,practice} |
+ treeview | 7 | {bio,bio-phylogeny} |
+ biojava-live | 6 | {bio-dev} |
orthanc-postgresql | 6 | {imaging} |
- oscar | 6 | {data,practice,tools} |
sight | 6 | {imaging} |
- treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
+ fsm-lite | 5 | {bio} |
+ libncl | 5 | {bio} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
+ melting | 5 | {bio,cloud} |
nifticlib | 5 | {imaging-dev} |
+ orthanc-gdcm | 5 | {imaging} |
+ phyutility | 5 | {cloud,bio} |
+ piler | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
+ stacks | 5 | {bio} |
+ anfo | 4 | {bio,cloud} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ clonalorigin | 4 | {bio} |
dicompyler | 4 | {oncology} |
- fsm-lite | 4 | {bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {bio,cloud} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ fastml | 4 | {bio} |
+ gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
+ lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libncl | 4 | {bio} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- melting | 4 | {cloud,bio} |
- phyutility | 4 | {cloud,bio} |
- piler | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- stacks | 4 | {bio} |
- anfo | 3 | {cloud,bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ mauve-aligner | 4 | {bio} |
+ metaphlan2 | 4 | {bio} |
+ microbegps | 4 | {bio} |
+ orthanc-mysql | 4 | {imaging} |
+ placnet | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ rtax | 4 | {cloud,bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
+ assemblytics | 3 | {bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
+ bitseq | 3 | {bio} |
brig | 3 | {bio} |
+ canu | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
- clonalorigin | 3 | {bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ delly | 3 | {covid-19,bio} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {bio,cloud} |
emboss-explorer | 3 | {bio} |
- fastml | 3 | {bio} |
- gatb-core | 3 | {bio} |
- ghmm | 3 | {bio} |
- ipig | 3 | {bio} |
- lamarc | 3 | {bio} |
- libmuscle | 3 | {bio-dev} |
+ hinge | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
+ libpal-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
- microbegps | 3 | {bio} |
+ mhap | 3 | {bio,bio-ngs} |
ncbi-vdb | 3 | {bio-dev} |
+ obitools | 3 | {bio} |
opencfu | 3 | {laboratory} |
openslide | 3 | {imaging-dev} |
orthanc-python | 3 | {covid-19} |
- placnet | 3 | {bio} |
+ phast | 3 | {bio} |
plasmidseeker | 3 | {bio} |
- proalign | 3 | {bio-phylogeny,bio} |
pymia | 3 | {imaging-dev} |
rambo-k | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- sibsim4 | 3 | {cloud,bio} |
- spread-phy | 3 | {bio,bio-phylogeny} |
+ rdp-alignment | 3 | {bio} |
+ sga | 3 | {bio} |
+ sprai | 3 | {bio} |
+ staden | 3 | {bio} |
+ suitename | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
bambamc | 2 | {bio-dev} |
- bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
+ biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
- canu | 2 | {bio} |
- clonalframeml | 2 | {bio,covid-19} |
- delly | 2 | {covid-19,bio} |
- dextractor | 2 | {bio,covid-19} |
+ dextractor | 2 | {covid-19,bio} |
gatb-core | 2 | {bio-dev} |
gifticlib | 2 | {imaging-dev} |
- hinge | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libbpp-core | 2 | {bio-dev} |
libbpp-phyl | 2 | {bio-dev} |
@@ -121,34 +132,30 @@ Last-Update: Thu, 04 Nov 2021 01:42:04 +0000
libgkarrays | 2 | {bio-dev} |
libhmsbeagle | 2 | {bio-dev} |
libmems | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
+ libmuscle | 2 | {bio-dev} |
libqes | 2 | {bio-dev} |
libseqlib | 2 | {bio-dev} |
libstatgen | 2 | {bio-dev} |
- obitools | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
parallel-fastq-dump | 2 | {covid-19} |
pbcopper | 2 | {bio-dev} |
pbseqlib | 2 | {bio-dev} |
- phast | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- sga | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
sift | 2 | {bio} |
- sprai | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
srf | 2 | {bio-dev} |
- staden | 2 | {bio} |
- suitename | 2 | {bio} |
- tracetuner | 2 | {bio} |
+ surankco | 2 | {bio} |
+ tvc | 2 | {bio} |
varna | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
atropos | 1 | {bio} |
- biomaj3-cli | 1 | {cloud} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
emmax | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
- intake | 1 | {bio-dev,bio} |
+ intake | 1 | {bio,bio-dev} |
kmerresistance | 1 | {bio} |
libbigwig | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
@@ -157,18 +164,12 @@ Last-Update: Thu, 04 Nov 2021 01:42:04 +0000
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- pplacer | 1 | {bio-phylogeny,bio,covid-19} |
- pscan-chip | 1 | {bio} |
- qcumber | 1 | {bio} |
+ pplacer | 1 | {bio-phylogeny,covid-19,bio} |
shovill | 1 | {covid-19,bio} |
skesa | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- surankco | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {covid-19,bio} |
- tvc | 1 | {bio} |
acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -179,9 +180,9 @@ Last-Update: Thu, 04 Nov 2021 01:42:04 +0000
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmialm | 0 | {imaging-dev} |
libpsortb | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
@@ -189,24 +190,24 @@ Last-Update: Thu, 04 Nov 2021 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbseqlib | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
trace2dbest | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
-(238 rows)
+(239 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a4011333c7d66214449776983d83c5581d63f44c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a4011333c7d66214449776983d83c5581d63f44c
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20211104/23b77121/attachment-0001.htm>