[med-svn] [Git][med-team/sepp][master] 15 commits: New upstream version 4.5.1+really4.5.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / sepp


Commits:
06e3158e by Pierre Gruet at 2021-09-30T11:22:27+02:00
New upstream version 4.5.1+really4.5.1+dfsg
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b677c795 by Pierre Gruet at 2021-09-30T11:22:51+02:00
Update upstream source from tag 'upstream/4.5.1+really4.5.1+dfsg'

Update to upstream version '4.5.1+really4.5.1+dfsg'
with Debian dir 7e0ad92d8726e90022378f9c19d3af73960bead4
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5589222d by Pierre Gruet at 2021-09-30T11:23:48+02:00
Revert "Correcting a wrong revert"

This reverts commit f1e861981aabdb46391a5ff71c14e0a75beac7a3.

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252c7e58 by Pierre Gruet at 2021-09-30T11:24:01+02:00
Revert "Refreshing patch"

This reverts commit 6cdef168b106499c97f4729dfb0712c2ffabdd03.

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625a07b1 by Pierre Gruet at 2021-09-30T11:24:05+02:00
Revert "Revert "tipp is now shipped in a different source package""

This reverts commit da8ea50f0805b1d96f8259099230325f0b90644d.

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b6398f1a by Pierre Gruet at 2021-09-30T11:24:07+02:00
Revert "Revert "Refreshing patches, deleting 3 upstreamed ones""

This reverts commit 548f0a82a3d7a71b8557779986ce3c8fc94ebded.

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a5ccccb5 by Pierre Gruet at 2021-09-30T11:24:08+02:00
Revert "Revert "Using the Debian path of hmmbuild in the test testUPP""

This reverts commit b7059fd263b927859fd0dd02e4a2f9cab8bb48ec.

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a14f1ab1 by Pierre Gruet at 2021-09-30T11:24:09+02:00
Revert "Revert "Refreshing manpages of run-sepp.py and run_sepp.py""

This reverts commit 0b770f16b9374c8fae8360c8cf91b3283496cb00.

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d10b1518 by Pierre Gruet at 2021-09-30T11:34:40+02:00
Adding sepp.maintscript to remove the config file of tipp

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7f1fb9f1 by Pierre Gruet at 2021-09-30T13:53:12+02:00
Upload to experimental

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13192d16 by Pierre Gruet at 2021-10-12T20:54:26+02:00
Setting the package to be Architecture: all

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d0761665 by Pierre Gruet at 2021-10-12T20:54:37+02:00
Upload to experimental

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e37e00fe by Pierre Gruet at 2021-11-16T20:42:57+01:00
Setting the package as Architecture: any again

/bin/bash: ligne 1: q : commande introuvable

This reverts commit 13192d1607c1a4de135f72393584f6b6d1f9ea9d.

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ce774212 by Pierre Gruet at 2021-11-16T20:45:43+01:00
Updating changelog

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6e23e092 by Pierre Gruet at 2021-11-16T21:36:28+01:00
Upload to unstable

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30 changed files:

- + .coveragerc
- .travis.yml
- CHANGELOG.md
- README.SEPP.md
- − README.TIPP.md
- README.UPP.md
- README.md
- debian/README.Debian
- debian/README.source
- debian/changelog
- debian/control
- debian/docs
- debian/man/run-sepp.sh.1
- − debian/man/run_abundance.py.1
- debian/man/run_sepp.py.1
- − debian/man/run_tipp.py.1
- − debian/man/run_tipp_tool.py.1
- − debian/man/tipp.config.5
- debian/patches/change_java_version_for_ant.patch
- debian/patches/configuration_files_in_etc_and_per_user.patch
- + debian/patches/hmmbuild_path_for_testUPP.patch
- debian/patches/java_build.patch
- − debian/patches/json_collections.patch
- − debian/patches/looking_for_integer_in_placements.patch
- − debian/patches/make_split_sequences_script.patch
- debian/patches/series
- debian/patches/setup.patch
- debian/patches/use_debian_packaged_guppy_from_pplacer.patch
- debian/patches/using_python3_interpreter.patch
- debian/rules


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/1d4a74a1414844a3dc5bad341377ae9892c3f0eb...6e23e0926c222a87ce369952e31daaf1cc62c6d5

-- 
View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/1d4a74a1414844a3dc5bad341377ae9892c3f0eb...6e23e0926c222a87ce369952e31daaf1cc62c6d5
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