[med-svn] [Git][med-team/htsjdk][master] 23 commits: New upstream version 2.24.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / htsjdk


Commits:
b869680b by Pierre Gruet at 2021-11-17T22:36:52+01:00
New upstream version 2.24.1+dfsg
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779de1be by Pierre Gruet at 2021-11-17T22:37:36+01:00
Update upstream source from tag 'upstream/2.24.1+dfsg'

Update to upstream version '2.24.1+dfsg'
with Debian dir cb654b32388c697a697d1931f4038fb47a7f64a0
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0fb7936c by Pierre Gruet at 2021-11-17T22:40:53+01:00
Refreshing poms

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10e509a4 by Pierre Gruet at 2021-11-17T22:54:48+01:00
Refreshing patches

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4caddb24 by Pierre Gruet at 2021-11-21T21:36:48+01:00
Skipping more tests using http

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6809f5d4 by Pierre Gruet at 2021-11-21T21:37:00+01:00
Refreshing patches

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49f5b8ec by Pierre Gruet at 2021-11-21T21:37:16+01:00
Refreshing classpath

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f5fdc1b9 by Pierre Gruet at 2021-11-21T22:23:59+01:00
Using json-simple instead of unpackaged mjson

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6dcff872 by Pierre Gruet at 2021-11-21T22:24:09+01:00
Updating dependencies list

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9b400690 by Pierre Gruet at 2021-11-21T22:27:51+01:00
Adding myself as uploader

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8963d74d by Pierre Gruet at 2021-11-21T22:29:56+01:00
Removing default gbp.conf file

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ac2dc289 by Pierre Gruet at 2021-11-21T23:13:27+01:00
Adding a Lintian override for the embedded Javascript

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9ac703b9 by Pierre Gruet at 2021-11-23T16:48:40+01:00
Refreshing d/copyright

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18780801 by Pierre Gruet at 2021-11-23T16:49:54+01:00
Setting Standards version to 4.6.0 (no change)

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05fd7d9b by Pierre Gruet at 2021-11-23T16:51:51+01:00
Removing now useless versioned dependency on default-jdk

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b22b023d by Pierre Gruet at 2021-11-23T16:59:34+01:00
Marking the -doc package as Multi-Arch: foreign

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1a160804 by Pierre Gruet at 2021-11-23T17:01:17+01:00
Updating changelog

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3af9b51a by Pierre Gruet at 2021-11-23T17:03:20+01:00
Trim trailing whitespace.

Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html

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6c8ded58 by Pierre Gruet at 2021-11-23T17:03:22+01:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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91b3ce46 by Pierre Gruet at 2021-11-23T17:31:58+01:00
Forwarding patches

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2954c6f4 by Pierre Gruet at 2021-11-23T17:34:53+01:00
Adding description of patch 120-fix-build.patch

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d6c94757 by Pierre Gruet at 2021-11-23T22:03:14+01:00
Refreshing libhtsjdk-java.README.Debian

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bd5afd0f by Pierre Gruet at 2021-11-23T23:28:16+01:00
Upload to unstable

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30 changed files:

- .gitignore
- .travis.yml
- README.md
- build.gradle
- debian/changelog
- debian/control
- debian/copyright
- − debian/gbp.conf
- debian/htsjdk.pom
- debian/htsjdk.pom.asc
- + debian/libhtsjdk-java-doc.lintian-overrides
- debian/libhtsjdk-java.README.Debian
- debian/libhtsjdk-java.classpath
- debian/patches/10-build.xml.patch
- debian/patches/100-fix-java11
- debian/patches/110-debian-lib-version.patch
- debian/patches/120-fix-build.patch
- + debian/patches/130-use-json-simple-instead-of-mjson.patch
- debian/patches/20-fix-version.patch
- debian/patches/30-disable-scalatest.patch
- debian/patches/40-fix-java9
- debian/patches/60-enable-tests
- debian/patches/80-2to3.patch
- debian/patches/90-disable-testftp.patch
- debian/patches/92-disable-testhttp.patch
- debian/patches/series
- + scripts/htsget-scripts/README.md
- + scripts/htsget-scripts/htsget_config.json
- + scripts/htsget-scripts/start-htsget-test-server.sh
- + src/main/java/htsjdk/io/AsyncWriterPool.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8...bd5afd0f039de49384c8e50a00f45f38a5b0a848

-- 
View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8...bd5afd0f039de49384c8e50a00f45f38a5b0a848
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