[med-svn] [Git][med-team/beast-mcmc][master] 9 commits: Fix watchfile to detect new versions on github
Andreas Tille (@tille)
gitlab at salsa.debian.org
Fri Oct 1 12:08:33 BST 2021
Andreas Tille pushed to branch master at Debian Med / beast-mcmc
Commits:
e1e42ab6 by Andreas Tille at 2021-10-01T12:45:48+02:00
Fix watchfile to detect new versions on github
- - - - -
4f799e43 by Andreas Tille at 2021-10-01T12:46:21+02:00
routine-update: Standards-Version: 4.6.0
- - - - -
3ed76eb4 by Andreas Tille at 2021-10-01T12:46:21+02:00
routine-update: debhelper-compat 13
- - - - -
4d4d1ce1 by Andreas Tille at 2021-10-01T12:46:26+02:00
routine-update: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
- - - - -
ee1d5041 by Andreas Tille at 2021-10-01T12:46:26+02:00
routine-update: Add salsa-ci file
- - - - -
a0dca526 by Andreas Tille at 2021-10-01T12:46:26+02:00
routine-update: Rules-Requires-Root: no
- - - - -
49dc3fb8 by Andreas Tille at 2021-10-01T12:46:32+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
334ee6e8 by Andreas Tille at 2021-10-01T12:46:38+02:00
routine-update: watch file standard 4
- - - - -
9a4ba944 by Andreas Tille at 2021-10-01T12:49:51+02:00
routine-update: Ready to upload to unstable
- - - - -
7 changed files:
- debian/changelog
- − debian/compat
- debian/control
- + debian/salsa-ci.yml
- debian/tests/run-unit-test
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,9 +1,21 @@
-beast-mcmc (1.10.4+dfsg-3) UNRELEASED; urgency=medium
+beast-mcmc (1.10.4+dfsg-3) unstable; urgency=medium
+ [ Debian Janitor ]
* Apply multi-arch hints.
+ beast-mcmc-examples: Add Multi-Arch: foreign.
- -- Debian Janitor <janitor at jelmer.uk> Wed, 28 Oct 2020 05:24:55 -0000
+ [ Andreas Tille ]
+ * Fix watchfile to detect new versions on github
+ * Standards-Version: 4.6.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+ * watch file standard 4 (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Fri, 01 Oct 2021 12:46:38 +0200
beast-mcmc (1.10.4+dfsg-2) unstable; urgency=medium
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -4,16 +4,16 @@ Uploaders: Andreas Tille <tille at debian.org>,
Olivier Sallou <osallou at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
javahelper,
ant,
ant-optional,
default-jdk,
libjebl2-java,
- libjam-java (>= 0.1.20140824),
+ libjam-java,
figtree,
liboptions-java,
- libhmsbeagle-java (>= 3.1.2~),
+ libhmsbeagle-java,
libcolt-free-java,
libmpj-java,
r-cran-rjava,
@@ -24,16 +24,17 @@ Build-Depends: debhelper (>= 11~),
libitext1-java,
libejml-java (>= 0.38),
libjlapack-java
-Standards-Version: 4.2.1
+Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/beast-mcmc
Vcs-Git: https://salsa.debian.org/med-team/beast-mcmc.git
Homepage: http://beast.bio.ed.ac.uk/
+Rules-Requires-Root: no
Package: beast-mcmc
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends},
- libhmsbeagle-java (>= 3.1.2~),
+ libhmsbeagle-java,
${java:Depends},
default-jre | java6-runtime,
libnucleotidelikelihoodcore0 (>= ${source:Version}),
@@ -74,11 +75,11 @@ Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc
Package: beast-mcmc-examples
Architecture: all
+Multi-Arch: foreign
Section: doc
Depends: ${shlibs:Depends},
${misc:Depends}
Enhances: beast-mcmc
-Multi-Arch: foreign
Description: Bayesian MCMC phylogenetic inference - example data
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/tests/run-unit-test
=====================================
@@ -1,9 +1,9 @@
#!/bin/bash -e
pkg=beast-mcmc
-if [ "$ADTTMP" = "" ] ; then
- ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+ AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
for file in /usr/share/doc/beast-mcmc/examples/*/*\.xml
do
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/beast-dev/beast-mcmc/issues
+Bug-Submit: https://github.com/beast-dev/beast-mcmc/issues/new
Reference:
Author: Alexei J Drummond and Andrew Rambaut
Title: "BEAST: Bayesian evolutionary analysis by sampling trees"
@@ -19,3 +21,5 @@ Registry:
Entry: OMICS_04233
- Name: conda:bioconda
Entry: beast
+Repository: https://github.com/beast-dev/beast-mcmc.git
+Repository-Browse: https://github.com/beast-dev/beast-mcmc
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
-version=3
+version=4
opts="uversionmangle=s/_/./g,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
- https://github.com/beast-dev/beast-mcmc/releases .*/archive/[a-z_]*(\d[\d._]+)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))
+ https://github.com/beast-dev/beast-mcmc/releases .*/[a-z_]*(\d[\d._]+)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))
View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba
--
View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/-/compare/d8c19a152013d5147c3dd5321a3dc4044853e72b...9a4ba94491a9c7ecf5685c39b77e7bdb11fed3ba
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