[med-svn] [Git][med-team/atropos][upstream] New upstream version 2.0.0~a7+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / atropos


Commits:
21138b33 by Andreas Tille at 2021-10-14T11:14:38+02:00
New upstream version 2.0.0~a7+dfsg
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30 changed files:

- CHANGES.md
- Dockerfile
- MANIFEST.in
- atropos/adapters/__init__.py
- atropos/commands/console.py
- atropos/commands/legacy_reports.py
- atropos/commands/metrics.py
- atropos/commands/multicore.py
- atropos/commands/qc/__init__.py
- atropos/commands/reports.py
- atropos/commands/trim/__init__.py
- atropos/commands/trim/console.py
- atropos/commands/trim/modifiers.py
- atropos/console.py
- atropos/errors.py
- atropos/io/formatters.py
- atropos/io/readers/_impl.py
- atropos/io/readers/_readers.pyx
- atropos/io/sequence/__init__.py
- atropos/io/sequence/_sequence.pyx
- atropos/utils/ngs.py
- paper/containers/tools/atropos-paper/Dockerfile
- requirements-extra.txt
- requirements.txt
- setup.py
- tests/conftest.py
- tests/data/expected/paired_insert.sam
- tests/data/input/paired.sam
- tests/test_adapters.py
- tests/test_atropos.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/atropos/-/commit/21138b33c6417a6a13a4a46757023c7c2b84db67

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View it on GitLab: https://salsa.debian.org/med-team/atropos/-/commit/21138b33c6417a6a13a4a46757023c7c2b84db67
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