[med-svn] [Git][med-team/python-biopython][master] 16 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-biopython


Commits:
3f62def3 by Étienne Mollier at 2021-10-11T22:36:40+02:00
routine-update: New upstream version

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40e2966f by Étienne Mollier at 2021-10-11T22:36:47+02:00
New upstream version 1.79+dfsg
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ce23f831 by Étienne Mollier at 2021-10-11T22:36:47+02:00
Remove constraints unnecessary since buster

* Build-Depends: Drop versioned constraint on dssp and ncbi-blast+.

Changes-By: deb-scrub-obsolete
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1a4aa75b by Étienne Mollier at 2021-10-11T22:36:47+02:00
remove blastdbv4-impl.patch; applied upstream

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4b585c6e by Étienne Mollier at 2021-10-11T22:36:48+02:00
remove stabilize-phyml-test.patch; applied upstream

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14d20cd5 by Étienne Mollier at 2021-10-11T22:36:48+02:00
remove spelling-error-in-binaries.patch; applied upstream

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ac93a469 by Étienne Mollier at 2021-10-11T23:43:39+02:00
refresh mkdssp4.path

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445b3aab by Étienne Mollier at 2021-10-12T00:02:23+02:00
left todo item

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d58b43a2 by Étienne Mollier at 2021-10-13T21:12:33+02:00
mkdssp4.path: remove diagnostic output

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9bf83bc8 by Étienne Mollier at 2021-10-15T22:13:33+02:00
mkdssp4.path: skip failing test for the time being

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ea5f7ced by Étienne Mollier at 2021-10-15T22:16:19+02:00
renamed mkdssp4.patch, fixing typo in file name

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69632550 by Étienne Mollier at 2021-10-16T11:54:59+02:00
add adjust-test_GraphicsBitmaps.patch

The test is normally skipped, due to missing font in renderpm, but
its error message changed shape, and was not caught anymore by the
logic of the skip.

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e6f81680 by Étienne Mollier at 2021-10-16T12:23:40+02:00
d/copyright: update years per LICENSE file

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cf181d11 by Étienne Mollier at 2021-10-16T12:28:14+02:00
add spelling.patch; fix spelling-error-in-binary

caught by lintian

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144a2642 by Étienne Mollier at 2021-10-16T12:30:31+02:00
mkdssp4.patch: update author's email address

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95533168 by Étienne Mollier at 2021-10-16T12:41:37+02:00
wrap up changelog to upload to experimental

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24 changed files:

- + .circleci/config.yml
- .flake8
- .pre-commit-config.yaml
- .travis-tox.ini
- .travis.yml
- Bio/Affy/CelFile.py
- Bio/Align/AlignInfo.py
- Bio/Align/Applications/__init__.py
- Bio/Align/__init__.py
- Bio/Align/_aligners.c
- Bio/Align/substitution_matrices/__init__.py
- Bio/AlignIO/ClustalIO.py
- Bio/AlignIO/EmbossIO.py
- Bio/AlignIO/FastaIO.py
- Bio/AlignIO/Interfaces.py
- Bio/AlignIO/MafIO.py
- Bio/AlignIO/MauveIO.py
- Bio/AlignIO/MsfIO.py
- Bio/AlignIO/NexusIO.py
- Bio/AlignIO/PhylipIO.py
- Bio/AlignIO/StockholmIO.py
- Bio/AlignIO/__init__.py
- Bio/Application/__init__.py
- Bio/Blast/Applications.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/ef7a7206bc88651db6ad15896461e4c5d30a55f6...955331683926a4b741af8ff819e972de46ab042c

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/ef7a7206bc88651db6ad15896461e4c5d30a55f6...955331683926a4b741af8ff819e972de46ab042c
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