[med-svn] [Git][med-team/bppsuite][master] 7 commits: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / bppsuite


Commits:
fe7c9be3 by Andreas Tille at 2021-10-18T15:37:42+02:00
Fix watchfile to detect new versions on github

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fa3d914d by Andreas Tille at 2021-10-18T15:37:45+02:00
New upstream version 3.0.0
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1dc0cb82 by Andreas Tille at 2021-10-18T15:37:45+02:00
routine-update: New upstream version

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53b02a79 by Andreas Tille at 2021-10-18T15:37:46+02:00
Update upstream source from tag 'upstream/3.0.0'

Update to upstream version '3.0.0'
with Debian dir cbca8ab9d69aa1907d12412c4d44d63757b873d7
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adc072a5 by Andreas Tille at 2021-10-18T15:37:47+02:00
routine-update: Standards-Version: 4.6.0

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603ca2f0 by Andreas Tille at 2021-10-18T15:48:53+02:00
Build-Depends: libeigen3-dev

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03eeedff by Andreas Tille at 2021-10-18T21:16:45+02:00
Try some patch to fix includes PATH but it seems upstream is building against a new version of libbpp-phyl which is not publicly released yet.

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30 changed files:

- + .gitignore
- CMakeLists.txt
- Examples/MaximumLikelihood/Codons/BranchModel/ML.bpp
- Examples/MaximumLikelihood/Codons/CladeModel/ML.bpp
- + Examples/MaximumLikelihood/Codons/CladeModel/Mixed/ML.bpp
- + Examples/MaximumLikelihood/Codons/CladeModel/Mixed/MixedLik.bpp
- + Examples/MaximumLikelihood/Codons/M0/Ancestor.bpp
- Examples/MaximumLikelihood/Codons/M0/ML.bpp
- + Examples/MaximumLikelihood/Codons/M1/Ancestor.bpp
- Examples/MaximumLikelihood/Codons/M1/ML.bpp
- + Examples/MaximumLikelihood/Codons/M1/MixedLik.bpp
- + Examples/MaximumLikelihood/Codons/M2/Ancestor.bpp
- Examples/MaximumLikelihood/Codons/M2/ML.bpp
- + Examples/MaximumLikelihood/Codons/MultiData/multidata.bpp
- + Examples/MaximumLikelihood/Codons/MultiData/trees.newick
- Examples/MaximumLikelihood/Nucleotides/Homogeneous/Ancestor.bpp
- Examples/MaximumLikelihood/Nucleotides/Homogeneous/ML.bpp
- + Examples/MaximumLikelihood/Nucleotides/Homogeneous/SeqGen.bpp
- Examples/MaximumLikelihood/Nucleotides/NonHomogeneousGG/MLNHGG.bpp
- Examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/Ancestor.bpp
- Examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/MLNH.bpp
- Examples/MaximumLikelihood/Proteins/Homogeneous/ML.bpp
- + Examples/MaximumLikelihood/Proteins/Mixed/ML.bpp
- + Examples/MaximumLikelihood/Proteins/Mixed/MixedLik.bpp
- Examples/SequenceSimulation/Homogeneous/SeqGen.bpp
- Examples/SequenceSimulation/HomogeneousCovarion/SeqGen.bpp
- + Examples/SequenceSimulation/Mixture/SeqGen.bpp
- + Examples/SequenceSimulation/MultiModel/AutoCorr.bpp
- + Examples/SequenceSimulation/MultiModel/Partition.bpp
- Examples/SequenceSimulation/NonHomogeneous/SeqGen.bpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bppsuite/-/compare/1e899ab8cce178be0ed7f120dbd850be119c7a12...03eeedff24a1f6d59b0dbb7d53c0564f87413750

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View it on GitLab: https://salsa.debian.org/med-team/bppsuite/-/compare/1e899ab8cce178be0ed7f120dbd850be119c7a12...03eeedff24a1f6d59b0dbb7d53c0564f87413750
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