[med-svn] [Git][med-team/toil][upstream] New upstream version 5.4.0

[Steffen Möller (@moeller)]

Steffen Möller pushed to branch upstream at Debian Med / toil


Commits:
f4f95f8a by Steffen Moeller at 2021-09-03T18:01:47+02:00
New upstream version 5.4.0
- - - - -


30 changed files:

- .github/PULL_REQUEST_TEMPLATE.md
- .gitlab-ci.yml
- .travis.yml
- Makefile
- attic/README.md
- common.mk
- + contrib/admin/cleanup_aws_resources.py
- + contrib/admin/mypy-with-ignore.py
- + contrib/admin/remove_trailing_whitespace.py
- contrib/admin/test-pr
- + contrib/toil-cwl-runner/README.rst
- + contrib/toil-cwl-runner/pyproject.toml
- + contrib/toil-cwl-runner/setup.cfg
- + contrib/typeshed/nacl/__init__.pyi
- + contrib/typeshed/nacl/encoding.pyi
- + contrib/typeshed/nacl/secret.pyi
- + contrib/typeshed/nacl/utils.pyi
- dashboard/prometheus/Dockerfile
- docker/Dockerfile.py
- + docker/singularity-wrapper.sh
- docs/appendices/environment_vars.rst
- docs/conf.py
- + docs/contributing/checklists.rst
- docs/contributing/contributing.rst
- docs/developingWorkflows/developing.rst
- docs/index.rst
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- + docs/running/cloud/dashboard_screenshot.png
- docs/running/cloud/kubernetes.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/f4f95f8ae4d33af5ab9f12d1b8af6127098018c4

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