[med-svn] [Git][med-team/bamtools][master] 8 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / bamtools


Commits:
c606f873 by Michael R. Crusoe at 2021-09-17T15:17:35+02:00
routine-update: New upstream version

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a769207c by Michael R. Crusoe at 2021-09-17T15:17:36+02:00
New upstream version 2.5.2+dfsg
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0061bf71 by Michael R. Crusoe at 2021-09-17T15:17:36+02:00
Update upstream source from tag 'upstream/2.5.2+dfsg'

Update to upstream version '2.5.2+dfsg'
with Debian dir 085b6d0ae519b8000e32cc669d445421b031b7c9
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55ba350e by Michael R. Crusoe at 2021-09-17T15:17:37+02:00
routine-update: Standards-Version: 4.6.0

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0f3decc5 by Michael R. Crusoe at 2021-09-17T15:18:49+02:00
New upstream version fixes FTBFS with gcc-11. Closes: #983981

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4ad3d858 by Michael R. Crusoe at 2021-09-17T15:33:26+02:00
refresh patches

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3ca9f1b4 by Michael R. Crusoe at 2021-09-17T15:33:26+02:00
correct my email address

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aca8e445 by Michael R. Crusoe at 2021-09-17T15:39:48+02:00
unnecessary older-than versioned dependency: libbamtools-dev (<< 2.4.0+dfsg-6)

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30 changed files:

- + .github/workflows/build.yml
- CMakeLists.txt
- debian/changelog
- debian/control
- debian/patches/0001-ignore-thirdparty-and-fix-jsoncpp.patch
- − debian/patches/0003-remove-custom-ExportHeader-function-use-install-inst.patch
- − debian/patches/0006-Doxygen-reproducibility
- − debian/patches/0008_Cmake_Test.patch
- − debian/patches/doxygen-tweak
- debian/patches/series
- − debian/patches/spelling
- − debian/patches/tiddit.patch
- docs/Doxyfile
- src/CMakeLists.txt
- − src/ExportHeader.cmake
- src/api/BamAlignment.cpp
- src/api/BamAlignment.h
- src/api/BamAux.h
- src/api/BamConstants.h
- src/api/CMakeLists.txt
- src/api/SamHeader.cpp
- src/api/SamHeader.h
- src/api/SamProgram.cpp
- src/api/SamProgram.h
- src/api/SamProgramChain.cpp
- src/api/SamProgramChain.h
- src/api/SamReadGroup.cpp
- src/api/SamReadGroup.h
- src/api/SamReadGroupDictionary.cpp
- src/api/SamReadGroupDictionary.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bamtools/-/compare/54022a84bdccaa816c36541f01ba1196609b92a5...aca8e44548feb580ff00db8d3dd37c7e27d8969e

-- 
View it on GitLab: https://salsa.debian.org/med-team/bamtools/-/compare/54022a84bdccaa816c36541f01ba1196609b92a5...aca8e44548feb580ff00db8d3dd37c7e27d8969e
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