[med-svn] [Git][med-team/ivar][master] 2 commits: add gcc-11_2.patch; fixes ftbfs with Gcc 11

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / ivar


Commits:
bf52d1c5 by Andreas Tille at 2021-09-22T15:09:24+02:00
add gcc-11_2.patch; fixes ftbfs with Gcc 11

- - - - -
5e3caa48 by Andreas Tille at 2021-09-22T15:12:03+02:00
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/gcc-11_2.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+ivar (1.3.1+dfsg-3) unstable; urgency=medium
+
+  * add gcc-11_2.patch; fixes ftbfs with Gcc 11  (thanks for the patch
+    to Gianfranco Costamagna)
+    Closes: #984067
+
+ -- Andreas Tille <tille at debian.org>  Wed, 22 Sep 2021 15:09:57 +0200
+
 ivar (1.3.1+dfsg-2) unstable; urgency=medium
 
   * add forward-build-options.patch; build ivar with hardened build options


=====================================
debian/patches/gcc-11_2.patch
=====================================
@@ -0,0 +1,23 @@
+Description: Fix another gcc-11 build failure due to uninitialized variable
+Author: Gianfranco Costamagna <locutusofborg at debian.org>
+Bug-Debian: https://bugs.debian.org/984067
+Forwarded:
+Last-Update: 2021-09-22
+
+--- ivar-1.3.1+dfsg.orig/tests/test_primer_trim_edge_cases.cpp
++++ ivar-1.3.1+dfsg/tests/test_primer_trim_edge_cases.cpp
+@@ -29,7 +29,12 @@ int main(){
+   hts_itr_t *iter = NULL;
+   iter  = sam_itr_querys(idx, header, region_.c_str());
+   bam1_t *aln = bam_init1();
+-  cigar_ t;
++  cigar_ t = {
++    NULL,
++    false,
++    0,
++    0
++  };
+   uint32_t *cigar;
+   int primer_ctr = 0;
+   int ctr = 0;
+


=====================================
debian/patches/series
=====================================
@@ -1,4 +1,5 @@
 Fix-warning.patch
 forward-build-options.patch
 gcc-11.patch
+gcc-11_2.patch
 privacy-breach.patch



View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/f2c38ea22ac7797e28d770ff0c161967c1581db4...5e3caa488825527ab71fef9287cc3eb350ef83f6

-- 
View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/f2c38ea22ac7797e28d770ff0c161967c1581db4...5e3caa488825527ab71fef9287cc3eb350ef83f6
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