[med-svn] [Git][med-team/bbmap][master] 10 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bbmap


Commits:
b04f37cb by Étienne Mollier at 2021-09-25T22:02:27+02:00
routine-update: New upstream version

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f079cb51 by Étienne Mollier at 2021-09-25T22:02:28+02:00
New upstream version 38.93+dfsg
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6b7111c5 by Étienne Mollier at 2021-09-25T22:02:43+02:00
Update upstream source from tag 'upstream/38.93+dfsg'

Update to upstream version '38.93+dfsg'
with Debian dir 09dfdef2efe57c18ae83c0b2ba63892441cd247a
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81e789fd by Étienne Mollier at 2021-09-25T22:02:44+02:00
routine-update: Standards-Version: 4.6.0

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874fbeb9 by Étienne Mollier at 2021-09-25T22:03:02+02:00
routine-update: watch file standard 4

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f0c3cd57 by Étienne Mollier at 2021-09-25T22:57:21+02:00
d/m/bbduk.sh.1: fix groff-message

Leaving the file as is would otherwise be possibly causing
malformtions in the manual page.

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5054a585 by Étienne Mollier at 2021-09-25T22:59:41+02:00
d/control: fix duplicate word in bbmap description

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76ba9053 by Étienne Mollier at 2021-09-25T23:05:22+02:00
d/m/bbmap.sh.1: fix typos in bbmap(1) manual

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9d24a591 by Étienne Mollier at 2021-09-25T23:06:34+02:00
d/m/bbnorm.sh.1: fix a typo in bbnorm(1) manual

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9deaa6bb by Étienne Mollier at 2021-09-25T23:10:24+02:00
update changelog

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30 changed files:

- README.md
- current/align2/QualityTools.java
- current/assemble/KmerCompressor.java
- current/assemble/Shaver1.java
- current/assemble/Tadpole1.java
- current/bloom/BloomFilter.java
- current/bloom/BloomFilterCorrector.java
- current/bloom/BloomFilterCorrectorWrapper.java
- current/bloom/KmerCount7MTA.java
- current/cardinality/CardinalityTracker.java
- current/cardinality/LogLog_old.java
- current/clump/ClumpList.java
- current/clump/KmerComparator.java
- current/cluster/ClusterTools.java
- current/fileIO/ByteStreamWriter.java
- current/jgi/AssemblyStats2.java
- current/jgi/BBDuk.java
- current/jgi/BBDuk2.java
- current/jgi/BBMergeOverlapper.java
- current/jgi/Dedupe.java
- current/jgi/Dedupe2.java
- current/jgi/KExpand.java
- current/jgi/KmerCountExact.java
- current/jgi/RQCFilter2.java
- current/jgi/RQCFilterStats.java
- current/jgi/Seal.java
- + current/jgi/SealRefInfo.java
- current/kmer/AbstractKmerTable.java
- − current/kmer/AtomicShortArray.java
- current/kmer/KmerTableSet.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/7a0b4b6a1b15d2a420fb784adbe8c452af7d0292...9deaa6bb19e9dedcdc87b1af21f96086ca2f92a0

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/7a0b4b6a1b15d2a420fb784adbe8c452af7d0292...9deaa6bb19e9dedcdc87b1af21f96086ca2f92a0
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