[med-svn] [Git][med-team/ssake][master] 12 commits: upstream fixed tarball

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / ssake


Commits:
0abfe3c3 by Andreas Tille at 2021-09-27T13:40:51+02:00
upstream fixed tarball

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75cdc375 by Andreas Tille at 2021-09-27T13:41:13+02:00
New upstream version 4.0.1
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8ad46fbe by Andreas Tille at 2021-09-27T13:41:13+02:00
routine-update: New upstream version

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fe9de0b3 by Andreas Tille at 2021-09-27T13:41:23+02:00
Update upstream source from tag 'upstream/4.0.1'

Update to upstream version '4.0.1'
with Debian dir c1166f5722c188da2422d47ba3e40ea6702ff79b
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2defd052 by Andreas Tille at 2021-09-27T13:41:23+02:00
routine-update: Standards-Version: 4.6.0

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2f414d70 by Andreas Tille at 2021-09-27T13:41:23+02:00
routine-update: debhelper-compat 13

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467d995e by Andreas Tille at 2021-09-27T13:41:26+02:00
routine-update: Rules-Requires-Root: no

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434397af by Andreas Tille at 2021-09-27T13:41:32+02:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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fe82415e by Andreas Tille at 2021-09-27T13:41:39+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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dbbf040a by Andreas Tille at 2021-09-27T13:52:39+02:00
update patches

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951d0cd6 by Andreas Tille at 2021-09-27T14:01:53+02:00
Adapt install targets to new path in upstream source

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853f1291 by Andreas Tille at 2021-09-27T14:29:37+02:00
Upload to unstable

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30 changed files:

- + LICENSE
- debian/changelog
- debian/control
- debian/patches/2to3.patch
- debian/patches/do_not_send_mail_after_testing.patch
- debian/patches/no_privacy_breach_logo.patch
- debian/rules
- debian/ssake-examples.install
- debian/ssake.docs
- debian/ssake.install
- debian/upstream/metadata
- readme.md
- + ssake-logo.png
- SSAKE → ssake/SSAKE
- + ssake/readme.md
- test/CelegansLinkedReadsAssembly.sh → ssake/test/CelegansLinkedReadsAssembly.sh
- test/Herpesvirus_3.60kb.reads.fa → ssake/test/Herpesvirus_3.60kb.reads.fa
- test/Herpesvirus_3.60kb.reference.fa → ssake/test/Herpesvirus_3.60kb.reference.fa
- test/Herpesvirus_3.60kb.seed.fa → ssake/test/Herpesvirus_3.60kb.seed.fa
- test/HiSeqFusobacteriumAssembly.sh → ssake/test/HiSeqFusobacteriumAssembly.sh
- test/MiSeqCampylobacterAssembly.sh → ssake/test/MiSeqCampylobacterAssembly.sh
- test/MiSeqCampylobacterAssemblyPIPELINE.sh → ssake/test/MiSeqCampylobacterAssemblyPIPELINE.sh
- test/MiSeqEbolaAssemblyPIPELINE.sh → ssake/test/MiSeqEbolaAssemblyPIPELINE.sh
- test/MiSeqEcoliAssembly250XPE300.sh → ssake/test/MiSeqEcoliAssembly250XPE300.sh
- test/README.txt → ssake/test/README.txt
- test/RUNME.sh → ssake/test/RUNME.sh
- test/assembly_metrics_tests.txt → ssake/test/assembly_metrics_tests.txt
- test/coliMiSeq300m80.scaffolds.200stats → ssake/test/coliMiSeq300m80.scaffolds.200stats
- test/coliMiSeq300m80.scaffolds.500stats → ssake/test/coliMiSeq300m80.scaffolds.500stats
- test/coliMiSeq300m80.time → ssake/test/coliMiSeq300m80.time


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ssake/-/compare/6dad008eb742ae723bf25b6907cafbd7339127fa...853f129133309236688d2c18a9653f7f7417da7e

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View it on GitLab: https://salsa.debian.org/med-team/ssake/-/compare/6dad008eb742ae723bf25b6907cafbd7339127fa...853f129133309236688d2c18a9653f7f7417da7e
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