[med-svn] [Git][med-team/ssake][upstream] New upstream version 4.0.1

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / ssake


Commits:
75cdc375 by Andreas Tille at 2021-09-27T13:41:13+02:00
New upstream version 4.0.1
- - - - -


30 changed files:

- + LICENSE
- readme.md
- + ssake-logo.png
- SSAKE → ssake/SSAKE
- + ssake/readme.md
- test/CelegansLinkedReadsAssembly.sh → ssake/test/CelegansLinkedReadsAssembly.sh
- test/Herpesvirus_3.60kb.reads.fa → ssake/test/Herpesvirus_3.60kb.reads.fa
- test/Herpesvirus_3.60kb.reference.fa → ssake/test/Herpesvirus_3.60kb.reference.fa
- test/Herpesvirus_3.60kb.seed.fa → ssake/test/Herpesvirus_3.60kb.seed.fa
- test/HiSeqFusobacteriumAssembly.sh → ssake/test/HiSeqFusobacteriumAssembly.sh
- test/MiSeqCampylobacterAssembly.sh → ssake/test/MiSeqCampylobacterAssembly.sh
- test/MiSeqCampylobacterAssemblyPIPELINE.sh → ssake/test/MiSeqCampylobacterAssemblyPIPELINE.sh
- test/MiSeqEbolaAssemblyPIPELINE.sh → ssake/test/MiSeqEbolaAssemblyPIPELINE.sh
- test/MiSeqEcoliAssembly250XPE300.sh → ssake/test/MiSeqEcoliAssembly250XPE300.sh
- test/README.txt → ssake/test/README.txt
- test/RUNME.sh → ssake/test/RUNME.sh
- test/assembly_metrics_tests.txt → ssake/test/assembly_metrics_tests.txt
- test/coliMiSeq300m80.scaffolds.200stats → ssake/test/coliMiSeq300m80.scaffolds.200stats
- test/coliMiSeq300m80.scaffolds.500stats → ssake/test/coliMiSeq300m80.scaffolds.500stats
- test/coliMiSeq300m80.time → ssake/test/coliMiSeq300m80.time
- test/fusion-targets.fa → ssake/test/fusion-targets.fa
- test/runSSAKE.sh → ssake/test/runSSAKE.sh
- test/runSSAKEtargeted.sh → ssake/test/runSSAKEtargeted.sh
- tools/TQS.py → ssake/tools/TQS.py
- tools/TQS.readme → ssake/tools/TQS.readme
- tools/TQSexport.py → ssake/tools/TQSexport.py
- tools/TQSfastq.pl → ssake/tools/TQSfastq.pl
- tools/TQSfastq.py → ssake/tools/TQSfastq.py
- tools/TRIMMING_PAIRED_READS.README → ssake/tools/TRIMMING_PAIRED_READS.README
- tools/analyzePositionSSAKE.pl → ssake/tools/analyzePositionSSAKE.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ssake/-/commit/75cdc375e77d7ae1a553d00bf4ee070492ec0b95

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