[med-svn] [Git][med-team/lefse][master] 20 commits: New upstream version 1.1.2

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / lefse


Commits:
1b6d11f2 by Andreas Tille at 2021-09-28T06:33:44+02:00
New upstream version 1.1.2
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8c92624d by Andreas Tille at 2021-09-28T06:33:44+02:00
routine-update: New upstream version

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db06dc0c by Andreas Tille at 2021-09-28T06:33:44+02:00
Update upstream source from tag 'upstream/1.1.2'

Update to upstream version '1.1.2'
with Debian dir 2434070301209a69affe4bef5ada994928a41388
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3b56af0c by Andreas Tille at 2021-09-28T06:33:44+02:00
routine-update: Standards-Version: 4.6.0

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65d5346a by Andreas Tille at 2021-09-28T06:33:44+02:00
routine-update: debhelper-compat 13

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f476f65a by Andreas Tille at 2021-09-28T06:33:50+02:00
routine-update: Add salsa-ci file

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b79acc64 by Andreas Tille at 2021-09-28T06:33:50+02:00
routine-update: Rules-Requires-Root: no

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420e5518 by Andreas Tille at 2021-09-28T06:33:53+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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fcca5661 by Andreas Tille at 2021-09-28T06:46:16+02:00
Refresh patch

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28f71fce by Andreas Tille at 2021-09-28T07:04:46+02:00
buildsystem=pybuild

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b3671088 by Andreas Tille at 2021-09-28T07:07:27+02:00
Build-Depends: python3-setuptools

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1727c91a by Andreas Tille at 2021-09-28T07:20:17+02:00
Remove unneeded overrides

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1fc85b61 by Andreas Tille at 2021-09-28T07:20:47+02:00
Remove debian/get-orig-source

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27e1921e by Andreas Tille at 2021-09-28T07:21:47+02:00
lintian-overrides: script-with-language-extension

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c3907cc0 by Andreas Tille at 2021-09-28T07:28:41+02:00
  * Fix script names in autopkgtest
  * Inform users about changed names in debian/NEWS

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6116650a by Andreas Tille at 2021-09-28T08:03:40+02:00
Move lefse_format_input.py test at bottom since it has issues with h5py which are probably caused by the hdf5 transition.  Now we can see whether at least other tests are passing.

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6b11c819 by Andreas Tille at 2021-09-28T08:10:10+02:00
Rename and update manpages

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14642014 by Andreas Tille at 2021-09-28T08:19:57+02:00
Make sure .py extension is not stripped by dh_installman

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dc5c98a0 by Andreas Tille at 2021-09-28T08:23:29+02:00
Fix name in d/copyright

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5507a900 by Andreas Tille at 2021-09-28T08:24:52+02:00
Upload to unstable

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30 changed files:

- + .github/workflows/python_publish.yml
- − .hg_archival.txt
- − .hgtags
- + README.md
- + debian/NEWS
- debian/changelog
- debian/control
- debian/copyright
- − debian/get-orig-source
- + debian/lintian-overrides
- debian/mans/lefse2circlader.1 → debian/mans/lefse2circlader.py.1
- debian/mans/format_input.1 → debian/mans/lefse_format_input.py.1
- debian/mans/plot_cladogram.1 → debian/mans/lefse_plot_cladogram.py.1
- debian/mans/plot_features.1 → debian/mans/lefse_plot_features.py.1
- debian/mans/plot_res.1 → debian/mans/lefse_plot_res.py.1
- debian/mans/run_lefse.1 → debian/mans/lefse_run.py.1
- debian/mans/qiime2lefse.1 → debian/mans/qiime2lefse.py.1
- debian/patches/2to3.patch
- debian/rules
- + debian/salsa-ci.yml
- debian/tests/run-unit-test
- debian/upstream/metadata
- example/run.sh → example/bioconda-lefse_run.sh
- − format_input.py
- − lefse.py
- __init__.py → lefse/__init__.py
- + lefse/__pycache__/__init__.cpython-38.pyc
- + lefse/__pycache__/lefse.cpython-38.pyc
- + lefse/lefse.py
- + lefse/lefse.pyc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/lefse/-/compare/549ba7386d77baf8a274d0588721785d20bf939d...5507a90038ca8fee55cb90391276c0c4323281a7

-- 
View it on GitLab: https://salsa.debian.org/med-team/lefse/-/compare/549ba7386d77baf8a274d0588721785d20bf939d...5507a90038ca8fee55cb90391276c0c4323281a7
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