[med-svn] [Git][med-team/sepp][master] 11 commits: New upstream version 4.5.1+really4.3.10+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / sepp


Commits:
b925bd9e by Pierre Gruet at 2021-09-30T08:07:08+02:00
New upstream version 4.5.1+really4.3.10+dfsg
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cacba6f0 by Pierre Gruet at 2021-09-30T08:07:34+02:00
Update upstream source from tag 'upstream/4.5.1+really4.3.10+dfsg'

Update to upstream version '4.5.1+really4.3.10+dfsg'
with Debian dir 53e27a7e0620f20fc346af0dee9d11ede8840338
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0d15e565 by Pierre Gruet at 2021-09-30T08:08:51+02:00
Revert "Adding d/sepp.maintscript to remove /etc/sepp/tipp/config, gone in tipp source package"

This reverts commit 8a2491a35a8e05bf32860f98f53cc196d90508c4.

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0b770f16 by Pierre Gruet at 2021-09-30T08:09:14+02:00
Revert "Refreshing manpages of run-sepp.py and run_sepp.py"

This reverts commit 6a53c852e9013c3c396ac0c57bd2c698e51acd96.

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b7059fd2 by Pierre Gruet at 2021-09-30T08:09:35+02:00
Revert "Using the Debian path of hmmbuild in the test testUPP"

This reverts commit 2a9d4b7eb31efbc8eb11b02490fb62551aa58c84.

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548f0a82 by Pierre Gruet at 2021-09-30T08:12:29+02:00
Revert "Refreshing patches, deleting 3 upstreamed ones"

This reverts commit f951b94361db1998cb9c1f01c73ad49da0dff74a.

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da8ea50f by Pierre Gruet at 2021-09-30T08:15:07+02:00
Revert "tipp is now shipped in a different source package"

This reverts commit 18481475d9b59a8fc200521e622011e6831659ea.

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6cdef168 by Pierre Gruet at 2021-09-30T08:20:27+02:00
Refreshing patch

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f1e86198 by Pierre Gruet at 2021-09-30T08:46:41+02:00
Correcting a wrong revert

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44282b6e by Pierre Gruet at 2021-09-30T08:47:03+02:00
Updating changelog

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1d4a74a1 by Pierre Gruet at 2021-09-30T10:57:35+02:00
Upload to unstable

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30 changed files:

- − .coveragerc
- .travis.yml
- CHANGELOG.md
- README.SEPP.md
- + README.TIPP.md
- README.UPP.md
- README.md
- debian/README.Debian
- debian/README.source
- debian/changelog
- debian/control
- debian/docs
- debian/man/run-sepp.sh.1
- + debian/man/run_abundance.py.1
- debian/man/run_sepp.py.1
- + debian/man/run_tipp.py.1
- + debian/man/run_tipp_tool.py.1
- + debian/man/tipp.config.5
- debian/patches/change_java_version_for_ant.patch
- debian/patches/configuration_files_in_etc_and_per_user.patch
- − debian/patches/hmmbuild_path_for_testUPP.patch
- debian/patches/java_build.patch
- + debian/patches/json_collections.patch
- + debian/patches/looking_for_integer_in_placements.patch
- + debian/patches/make_split_sequences_script.patch
- debian/patches/series
- debian/patches/setup.patch
- debian/patches/use_debian_packaged_guppy_from_pplacer.patch
- debian/patches/using_python3_interpreter.patch
- debian/rules


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/8f23da4dd72117ed39b7d98913e3cd536cf10e2a...1d4a74a1414844a3dc5bad341377ae9892c3f0eb

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View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/8f23da4dd72117ed39b7d98913e3cd536cf10e2a...1d4a74a1414844a3dc5bad341377ae9892c3f0eb
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