[med-svn] [Git][med-team/trinityrnaseq][master] 5 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
ac485f3b by Michael R. Crusoe at 2022-04-10T17:59:25+02:00
routine-update: New upstream version

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9773f0b9 by Michael R. Crusoe at 2022-04-10T17:59:31+02:00
New upstream version 2.14.0+dfsg
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9b0389d9 by Michael R. Crusoe at 2022-04-10T18:02:57+02:00
Update upstream source from tag 'upstream/2.14.0+dfsg'

Update to upstream version '2.14.0+dfsg'
with Debian dir ac2d43771032130480ff704d3c148bd7a2f05457
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02ba8e4d by Michael R. Crusoe at 2022-04-10T18:06:20+02:00
Refresh patches

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556d5958 by Michael R. Crusoe at 2022-04-10T18:07:36+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- Analysis/DifferentialExpression/run_GOseq.pl
- Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl
- Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
- Changelog.txt
- Docker/VERSION.txt
- Docker/cleanMe.sh
- Makefile
- PerlLib/CDNA/PASA_alignment_assembler.pm
- PerlLib/COMMON.pm
- Trinity
- debian/changelog
- debian/patches/adjust-trimmomatic-adapters-path
- debian/patches/disable-version-check
- debian/patches/hardening
- debian/patches/series
- debian/patches/submake
- debian/patches/update-paths
- − debian/patches/which_command_v
- sample_data/Makefile
- trinity-plugins/Makefile
- trinity-plugins/ParaFly/Makefile
- trinity-plugins/ParaFly/config.log
- trinity-plugins/ParaFly/config.status
- trinity-plugins/ParaFly/src/Makefile
- trinity-plugins/scaffold_iworm_contigs/Makefile
- util/align_and_estimate_abundance.pl
- util/misc/SRA_to_fastq.pl
- util/misc/blat_util/blat_to_sam.pl
- util/misc/run_HISAT.pl
- util/misc/run_STAR.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/bba1be801a474037e1e4a05b1681b60f317c7506...556d5958b51bacb9eb86490257ecbf635c03747b

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/bba1be801a474037e1e4a05b1681b60f317c7506...556d5958b51bacb9eb86490257ecbf635c03747b
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