[med-svn] [Git][med-team/artemis][master] 12 commits: Now libbiojava-java provides biojava-core.jar and Maven artifacts

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / artemis


Commits:
bd09bca8 by Pierre Gruet at 2022-02-28T21:20:57+01:00
Now libbiojava-java provides biojava-core.jar and Maven artifacts

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3f045321 by Pierre Gruet at 2022-02-28T21:21:11+01:00
Refreshing patches

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88ee5209 by Pierre Gruet at 2022-02-28T21:58:23+01:00
Handling dependencies using maven:Depends substvar

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dacdba86 by Pierre Gruet at 2022-04-09T21:02:29+02:00
Updating changelog

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0c93ff46 by Pierre Gruet at 2022-04-09T21:05:26+02:00
New upstream version 18.2.0+dfsg
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982271d5 by Pierre Gruet at 2022-04-09T21:05:49+02:00
Update upstream source from tag 'upstream/18.2.0+dfsg'

Update to upstream version '18.2.0+dfsg'
with Debian dir 515489cf772c8851f0969980daf0312bc18c3f48
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c332cb5f by Pierre Gruet at 2022-04-09T21:37:53+02:00
Refreshing d/copyright

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47ce9cbe by Pierre Gruet at 2022-04-10T22:39:05+02:00
Refreshing patches

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9927eec2 by Pierre Gruet at 2022-04-10T22:39:39+02:00
Adding versioned dependency on libbiojava-java with version 1:1.9.5+dfsg

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78f53c28 by Pierre Gruet at 2022-04-10T22:40:24+02:00
Updating changelog

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939ecc0f by Pierre Gruet at 2022-04-10T22:47:21+02:00
Fixing an incorrect specification of surefire argLine in pom.xml

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4c7dcdca by Pierre Gruet at 2022-04-11T08:58:47+02:00
Upload to experimental

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30 changed files:

- .classpath
- .travis.yml
- AUTHORS
- CHANGELOG.md
- LICENSE
- README.md
- − SUT.log4j.properties
- debian/artemis.manifest
- debian/changelog
- debian/control
- debian/copyright
- debian/maven.rules
- + debian/patches/fix_surefire_argline.patch
- debian/patches/missing_htsjdk_dependency_in_pom.patch
- debian/patches/no_install_of_provided_jars.patch
- debian/patches/running_build_tests.patch
- − debian/patches/samreader.patch
- debian/patches/series
- debian/patches/using_system_jars_in_pom.patch
- etc/log4j.properties
- etc/versions
- pom.xml
- src/main/java/uk/ac/sanger/artemis/components/Splash.java
- src/main/java/uk/ac/sanger/artemis/components/alignment/BamUtils.java
- src/main/java/uk/ac/sanger/artemis/io/IndexFastaStream.java
- − src/test/evosuite/org/gmod/schema/analysis/AnalysisFeature_ESTest.java
- − src/test/evosuite/org/gmod/schema/analysis/AnalysisFeature_ESTest_scaffolding.java
- − src/test/evosuite/org/gmod/schema/analysis/AnalysisProp_ESTest.java
- − src/test/evosuite/org/gmod/schema/analysis/AnalysisProp_ESTest_scaffolding.java
- − src/test/evosuite/org/gmod/schema/analysis/Analysis_ESTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/artemis/-/compare/02f9ef25567f128bc1021b56c822c59fcf1d3af0...4c7dcdcad7e62627f9a2bec7247d3b6ee0353db7

-- 
View it on GitLab: https://salsa.debian.org/med-team/artemis/-/compare/02f9ef25567f128bc1021b56c822c59fcf1d3af0...4c7dcdcad7e62627f9a2bec7247d3b6ee0353db7
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