[med-svn] [Git][med-team/bbmap][master] 6 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bbmap


Commits:
21b5a957 by Étienne Mollier at 2022-08-03T13:38:43+02:00
routine-update: New upstream version

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1c662261 by Étienne Mollier at 2022-08-03T13:38:44+02:00
New upstream version 38.97+dfsg
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c1cecd8b by Étienne Mollier at 2022-08-03T13:38:52+02:00
Update upstream source from tag 'upstream/38.97+dfsg'

Update to upstream version '38.97+dfsg'
with Debian dir e200566c98c7c77ad78befbbbf969c53d3970503
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51186649 by Étienne Mollier at 2022-08-03T13:38:52+02:00
routine-update: Standards-Version: 4.6.1

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2d6656bc by Étienne Mollier at 2022-08-03T13:51:42+02:00
d/rules: enable hardening.

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d95e7fb5 by Étienne Mollier at 2022-08-03T13:53:12+02:00
ready to upload to unstable.

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30 changed files:

- README.md
- + Xcalcmem.sh
- bbduk.sh
- clumpify.sh
- + current/clump/Hasher.java
- current/clump/KmerSort.java
- current/clump/KmerSort1.java
- current/clump/KmerSort2.java
- current/clump/KmerSort3.java
- current/clump/KmerSplit.java
- current/icecream/IceCreamFinder.java
- current/jgi/BBDuk.java
- current/jgi/RQCFilter2.java
- current/jgi/RQCFilterStats.java
- current/shared/Parser.java
- current/shared/Shared.java
- current/stream/FASTQ.java
- current/tax/GiToTaxid.java
- + current/tax/GiToTaxidInt.java
- current/tax/TaxServer.java
- current/tax/TaxTree.java
- debian/changelog
- debian/control
- debian/rules
- docs/changelog.txt
- removecatdogmousehuman.sh
- removehuman.sh
- removehuman2.sh
- removemicrobes.sh
- + resources/PacBioAdapter.fa


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/f01a00267ac54822b12ad0234e35849822af8180...d95e7fb5b260358a2fae04f475d75b1eed9f4605

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/f01a00267ac54822b12ad0234e35849822af8180...d95e7fb5b260358a2fae04f475d75b1eed9f4605
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