[med-svn] [Git][med-team/delly][master] 11 commits: routine-update: New upstream version

[Mohd Bilal (@rmb)]

Mohd  Bilal pushed to branch master at Debian Med / delly


Commits:
96d90ccf by Mohammed Bilal at 2022-08-10T13:18:27+00:00
routine-update: New upstream version

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7b060ce9 by Mohammed Bilal at 2022-08-10T13:18:33+00:00
New upstream version 1.1.3
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00b5d4f8 by Mohammed Bilal at 2022-08-10T13:18:34+00:00
Update upstream source from tag 'upstream/1.1.3'

Update to upstream version '1.1.3'
with Debian dir 9e6f75396c2119944f3383a0c827e450ce6c5e90
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f406333f by Mohammed Bilal at 2022-08-10T13:18:34+00:00
routine-update: Standards-Version: 4.6.1

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57cca538 by Mohammed Bilal at 2022-08-10T13:26:46+00:00
Add autopkgtests

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23aecf88 by Mohammed Bilal at 2022-08-10T13:48:47+00:00
d/rules : remove src/dpe from build target

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7f0b1d64 by Mohammed Bilal at 2022-08-10T13:50:54+00:00
d/rules: add missing CPPFLAG for fixing blhc

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1472f705 by Mohammed Bilal at 2022-08-10T14:04:31+00:00
do not install dpe binary

dpe binary is now integrated into delly

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ab08ea39 by Mohammed Bilal at 2022-08-10T14:59:13+00:00
update tests

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0b806ccf by Mohammed Bilal at 2022-08-10T15:00:47+00:00
use dpkg-buildflags for setting buildflags

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bdd387c0 by Mohammed Bilal at 2022-08-10T15:03:05+00:00
Update changelog

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30 changed files:

- + .github/workflows/compiler.yml
- + .github/workflows/docker-parallel.yml
- + .github/workflows/macosx.yml
- Makefile
- README.md
- debian/changelog
- debian/control
- debian/delly.install
- debian/rules
- + debian/tests/control
- + debian/tests/run-unit-test
- + example/lr.bam
- + example/lr.bam.bai
- + example/map.fa.gz
- + example/map.fa.gz.fai
- + example/map.fa.gz.gzi
- + example/ref.fa
- + example/ref.fa.fai
- + example/sr.bam
- + example/sr.bam.bai
- Dockerfile.parallel → parallel/Dockerfile
- + src/asmode.h
- src/assemble.h
- src/bed.h
- src/classify.h
- src/cnv.h
- src/coral.h
- src/coverage.h
- src/delly.cpp
- src/delly.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/delly/-/compare/872e39842e928657e1bc3c294aabe6e135dba54c...bdd387c08ab0ee91dca5c3982e6b5a0ba87e63b3

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View it on GitLab: https://salsa.debian.org/med-team/delly/-/compare/872e39842e928657e1bc3c294aabe6e135dba54c...bdd387c08ab0ee91dca5c3982e6b5a0ba87e63b3
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