[med-svn] [Git][med-team/ncbi-vdb][master] 19 commits: New upstream version 3.0.0+dfsg2

Thu Aug 25 06:28:59 BST 2022

Aaron M. Ucko pushed to branch master at Debian Med / ncbi-vdb

Commits:
e1be02db by Aaron M. Ucko at 2022-03-06T18:11:39-05:00
New upstream version 3.0.0+dfsg2
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4f6b8baf by Aaron M. Ucko at 2022-07-29T12:28:47-04:00
Formally start work on ncbi-vdb 3.0.0+dfsg-2 (to become +dfsg2-1).

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65982f60 by Aaron M. Ucko at 2022-08-07T16:02:37-04:00
Formally start work on ncbi-vdb 2.11.2+dfsg-5.

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f31a9303 by Aaron M. Ucko at 2022-08-24T15:03:53-04:00
debian/control: Clean up descriptions.

In particular, use a modern synopsis cribbed from vdb3/README.md as a
first paragraph across the board.

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14e06539 by Aaron M. Ucko at 2022-08-24T15:04:34-04:00
Note that all packages already qualify as Multi-Arch: same.

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8d44ee5d by Aaron M. Ucko at 2022-08-24T15:04:40-04:00
debian/copyright: Resync details with tarball contents.

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fea5dde5 by Aaron M. Ucko at 2022-08-24T15:04:40-04:00
debian/copyright: Stop claiming Upstream-Name: ngs.

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2c03eee9 by Aaron M. Ucko at 2022-08-24T15:04:40-04:00
Introduce ncbi-vdb-data for /usr/lib/ncbi-vdb.

These files are of interest to libncbi-wvdbN in addition to
libncbi-vdbN, and splitting them out also allows for a soft transition
to libncbi-vdb3, which would not otherwise permit coinstallation with
libncbi-vdb2.
* debian/control: Introduce ncbi-vdb-data (M-A: foreign) and have
  libncbi-(w)vdb2 depend on it.
* debian/ncbi-vdb-data.install: Rename from libncbi-vdb2.install.  (It
  listed only default configuration files, with d-shlibs taking care
  of the rest.)
* debian/rules: Move schemata to ncbi-vdb-data, not libncbi-vdb2.

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ee8c27b5 by Aaron M. Ucko at 2022-08-24T15:04:40-04:00
(debian/).gitignore: Ignore remaining generated files and subtrees.

* .gitignore: Also ignore libs/jni/jni(_md).h.
* debian/.gitignore (new): Ignore generated files and subtrees.

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4a056806 by Aaron M. Ucko at 2022-08-24T15:04:40-04:00
routine-update: Standards-Version: 4.6.1

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0d5665ad by Aaron M. Ucko at 2022-08-24T15:04:40-04:00
Finalize ncbi-vdb 2.11.2+dfsg-5 for upload (to unstable).

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4675344c by Aaron M. Ucko at 2022-08-25T00:52:12-04:00
Merge (or port, as appropriate) changes from 2.11.2+dfsg-5.

* Account for changes to the binary package inventory.
* Account for layout changes.
* Extend upstream's copyright through 2022.

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130df4a6 by Aaron M. Ucko at 2022-08-25T00:52:22-04:00
debian/copyright: Additionally exclude */vdb3/jwt-tool/googletest.

It came to my attention over formal line-ending mismatches relative to
the tarball (specifically in Visual Studio files).

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449623f7 by Aaron M. Ucko at 2022-08-25T00:52:22-04:00
debian/watch: Adjust dversionmangle to allow digits after +dfsg.

... per the (imminent) use of +dfsg2 for now.

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035f9e87 by Aaron M. Ucko at 2022-08-25T00:52:22-04:00
Merge tag 'upstream/3.0.0+dfsg2'

Upstream version 3.0.0+dfsg2.

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7f5cb81d by Aaron M. Ucko at 2022-08-25T00:52:22-04:00
debian/rules: Clean up fully between builds.

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d5ed4970 by Aaron M. Ucko at 2022-08-25T00:52:22-04:00
d/control: Drop unneeded build deps: libngs-*, default-jdk-headless.

Keeping libngs-* would have resulted in a dependency cycle with sra-sdk
3.x (which incorporates ngs-sdk), and default-jdk-headless is heavy.

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44ea0d7c by Aaron M. Ucko at 2022-08-25T00:54:00-04:00
.gitignore: Also ignore obj-* and test/vdb/kfg/*/user-settings.mkfg.

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9ed1364d by Aaron M. Ucko at 2022-08-25T00:55:47-04:00
Finalize ncbi-vdb 3.0.0+dfsg2-1 for upload to experimental.

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30 changed files:

- .gitignore
- + debian/.gitignore
- debian/changelog
- debian/control
- debian/copyright
- debian/rules
- debian/watch
- − vdb3/jwt-tool/googletest/.gitignore
- − vdb3/jwt-tool/googletest/.travis.yml
- − vdb3/jwt-tool/googletest/BUILD.bazel
- − vdb3/jwt-tool/googletest/CMakeLists.txt
- − vdb3/jwt-tool/googletest/CONTRIBUTING.md
- − vdb3/jwt-tool/googletest/LICENSE
- − vdb3/jwt-tool/googletest/Makefile.am
- − vdb3/jwt-tool/googletest/README.md
- − vdb3/jwt-tool/googletest/WORKSPACE
- − vdb3/jwt-tool/googletest/appveyor.yml
- − vdb3/jwt-tool/googletest/ci/build-linux-autotools.sh
- − vdb3/jwt-tool/googletest/ci/build-linux-bazel.sh
- − vdb3/jwt-tool/googletest/ci/env-linux.sh
- − vdb3/jwt-tool/googletest/ci/env-osx.sh
- − vdb3/jwt-tool/googletest/ci/get-nprocessors.sh
- − vdb3/jwt-tool/googletest/ci/install-linux.sh
- − vdb3/jwt-tool/googletest/ci/install-osx.sh
- − vdb3/jwt-tool/googletest/ci/log-config.sh
- − vdb3/jwt-tool/googletest/ci/travis.sh
- − vdb3/jwt-tool/googletest/configure.ac
- − vdb3/jwt-tool/googletest/googlemock/CHANGES
- − vdb3/jwt-tool/googletest/googlemock/CMakeLists.txt
- − vdb3/jwt-tool/googletest/googlemock/CONTRIBUTORS

The diff was not included because it is too large.

View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/compare/f3b782b32b82c642e3243f7c8e1d0ba414bf2304...9ed1364d15a3ba469bd32e961d0d177395d1ab1e

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/compare/f3b782b32b82c642e3243f7c8e1d0ba414bf2304...9ed1364d15a3ba469bd32e961d0d177395d1ab1e
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