[med-svn] [Git][med-team/igv][master] 10 commits: New upstream version 2.14.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
21c3ad2e by Pierre Gruet at 2022-08-29T15:36:15+02:00
New upstream version 2.14.0+dfsg
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baf4c355 by Pierre Gruet at 2022-08-29T15:38:00+02:00
Update upstream source from tag 'upstream/2.14.0+dfsg'

Update to upstream version '2.14.0+dfsg'
with Debian dir ad9e0359292db4c8fd144efb460f4d50c5f22dcc
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f9402836 by Pierre Gruet at 2022-08-29T15:44:56+02:00
Refreshing patches

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b9b6ed5a by Pierre Gruet at 2022-08-29T15:50:31+02:00
Excluding more tests requiring the network

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d05ae688 by Pierre Gruet at 2022-08-29T15:52:39+02:00
Updating changelog

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14839775 by Pierre Gruet at 2022-08-29T16:01:26+02:00
Reworking build dependencies, honouring B-D-Indep

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47432460 by Pierre Gruet at 2022-08-29T16:24:34+02:00
Removing a wrong @Override annotation

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bdd60b2b by Pierre Gruet at 2022-08-29T16:47:16+02:00
Importing the forgotten @Ignore annotation

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c1ad087e by Pierre Gruet at 2022-08-29T17:12:05+02:00
Adding a Lintian override for very-long-lines in a file

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eb4822fb by Pierre Gruet at 2022-08-29T17:15:37+02:00
Upload to unstable

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30 changed files:

- − IGV.iml
- build.gradle
- debian/changelog
- debian/control
- debian/patches/jide_dependency.patch
- − debian/patches/no_instantiation_of_URLDecoder.patch
- debian/patches/omit_aws_stuff.patch
- debian/patches/series
- debian/patches/skip_tests_network.patch
- + debian/patches/wrong_override.patch
- + debian/source/lintian-overrides
- license.txt
- scripts/nsis/license_win.txt
- scripts/test_suite.args
- src/main/java/org/broad/igv/Globals.java
- src/main/java/org/broad/igv/aws/S3LoadDialog.java
- src/main/java/org/broad/igv/batch/CommandExecutor.java
- src/main/java/org/broad/igv/bbfile/BBDataSource.java
- src/main/java/org/broad/igv/bbfile/BBFileReader.java
- src/main/java/org/broad/igv/bbfile/BedFeature.java → src/main/java/org/broad/igv/bbfile/BedData.java
- src/main/java/org/broad/igv/bbfile/BigBedDataBlock.java
- src/main/java/org/broad/igv/bbfile/BigBedIterator.java
- src/main/java/org/broad/igv/bbfile/codecs/BBBedCodec.java
- src/main/java/org/broad/igv/bbfile/codecs/BBCodec.java
- src/main/java/org/broad/igv/bbfile/codecs/BBCodecFactory.java
- − src/main/java/org/broad/igv/bbfile/codecs/BBGenePredCodec.java
- − src/main/java/org/broad/igv/bbfile/codecs/BBNarowPeakCodec.java
- + src/main/java/org/broad/igv/bbfile/codecs/BBRmskCodec.java
- src/main/java/org/broad/igv/feature/AbstractFeature.java
- src/main/java/org/broad/igv/feature/AbstractFeatureParser.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/17e214b8b362d462e5a00ccf6ea9ee43e12dcc20...eb4822fb2fc1efe2ec950e5c6b4047e435620d50

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/17e214b8b362d462e5a00ccf6ea9ee43e12dcc20...eb4822fb2fc1efe2ec950e5c6b4047e435620d50
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