[med-svn] [Git][med-team/hyphy][master] 5 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / hyphy


Commits:
b3056a38 by Étienne Mollier at 2022-02-11T13:22:11+01:00
routine-update: New upstream version

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5859d8f2 by Étienne Mollier at 2022-02-11T13:22:12+01:00
New upstream version 2.5.36+dfsg
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e4d1727c by Étienne Mollier at 2022-02-11T13:22:19+01:00
Update upstream source from tag 'upstream/2.5.36+dfsg'

Update to upstream version '2.5.36+dfsg'
with Debian dir 174726c56f8b35851dbb2dc64eb18d243ca4dca1
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a150fbcc by Étienne Mollier at 2022-02-11T13:33:30+01:00
d/hyphy-*.lintian-overrides: include typo line number.

This is necessary to match with the new format of the lintian
informational message.

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cdf1984e by Étienne Mollier at 2022-02-11T13:38:19+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- + .travis.yml
- CMakeLists.txt
- debian/changelog
- debian/control
- debian/hyphy-mpi.lintian-overrides
- debian/hyphy-pt.lintian-overrides
- res/TemplateBatchFiles/BGM.bf
- + res/TemplateBatchFiles/MSS-selector-2.bf
- + res/TemplateBatchFiles/MSS-selector.bf
- res/TemplateBatchFiles/SM-2019.bf
- res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def
- res/TemplateBatchFiles/libv3/IOFunctions.bf
- res/TemplateBatchFiles/libv3/UtilityFunctions.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/rate_variation.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/batchlan.cpp
- src/core/batchlan2.cpp
- src/core/batchlanruntime.cpp
- src/core/dataset.cpp
- src/core/dataset_filter.cpp
- src/core/fstring.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/723d9eb927a404b4fb43e0a48a6e0ed5adec28c3...cdf1984eab53222846d882ea6158c759356b4b13

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/723d9eb927a404b4fb43e0a48a6e0ed5adec28c3...cdf1984eab53222846d882ea6158c759356b4b13
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