[med-svn] [Git][med-team/libmaus2][master] 5 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / libmaus2


Commits:
ef1894ea by Étienne Mollier at 2022-02-11T13:57:17+01:00
routine-update: New upstream version

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09186942 by Étienne Mollier at 2022-02-11T13:57:18+01:00
New upstream version 2.0.809+ds
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c3fb45a2 by Étienne Mollier at 2022-02-11T13:57:23+01:00
Update upstream source from tag 'upstream/2.0.809+ds'

Update to upstream version '2.0.809+ds'
with Debian dir 56be747c73ec66225c4cf7360de2e8b1aef1b3f7
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8a5d5113 by Étienne Mollier at 2022-02-11T15:25:22+01:00
d/copyright: update contributors and years

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c184ece2 by Étienne Mollier at 2022-02-11T15:46:14+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- ChangeLog
- configure.ac
- debian/changelog
- debian/copyright
- src/Makefile.am
- src/libmaus2/aio/ArrayFile.hpp
- src/libmaus2/aio/ArrayInputStreamBuffer.hpp
- src/libmaus2/aio/MemoryOutputStreamFactory.hpp
- src/libmaus2/aio/OFStreamOutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactoryContainer.hpp
- src/libmaus2/aio/PosixFdOutputStreamFactory.hpp
- src/libmaus2/aio/SecrecyOutputStreamFactory.cpp
- src/libmaus2/aio/SecrecyOutputStreamFactory.hpp
- src/libmaus2/aio/SynchronousGenericInput.hpp
- src/libmaus2/bambam/BamAlignment.cpp
- src/libmaus2/dazzler/db/DatabaseFile.hpp
- src/libmaus2/fastx/KmerCount.hpp
- src/libmaus2/gamma/GammaGapEncoder.hpp
- src/libmaus2/gamma/Interval.hpp
- src/libmaus2/gamma/SparseGammaGapConcatDecoder.hpp
- src/libmaus2/gtf/RangeSets.hpp
- src/libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp
- src/libmaus2/lcs/TwoSidedNPL.hpp
- src/libmaus2/lz/StreamWrapperBuffer.hpp
- src/libmaus2/parallel/threadpool/ThreadPool.hpp
- src/libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp
- src/libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp
- + src/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp
- src/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/compare/0aabdb103932dcc5bd77e8731ce4a95512611a92...c184ece2c1ad4b30a37cf14948c056f30d14d658

-- 
View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/compare/0aabdb103932dcc5bd77e8731ce4a95512611a92...c184ece2c1ad4b30a37cf14948c056f30d14d658
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