[med-svn] [Git][med-team/libmaus2][upstream] New upstream version 2.0.809+ds

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / libmaus2


Commits:
09186942 by Étienne Mollier at 2022-02-11T13:57:18+01:00
New upstream version 2.0.809+ds
- - - - -


30 changed files:

- ChangeLog
- configure.ac
- src/Makefile.am
- src/libmaus2/aio/ArrayFile.hpp
- src/libmaus2/aio/ArrayInputStreamBuffer.hpp
- src/libmaus2/aio/MemoryOutputStreamFactory.hpp
- src/libmaus2/aio/OFStreamOutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactoryContainer.hpp
- src/libmaus2/aio/PosixFdOutputStreamFactory.hpp
- src/libmaus2/aio/SecrecyOutputStreamFactory.cpp
- src/libmaus2/aio/SecrecyOutputStreamFactory.hpp
- src/libmaus2/aio/SynchronousGenericInput.hpp
- src/libmaus2/bambam/BamAlignment.cpp
- src/libmaus2/dazzler/db/DatabaseFile.hpp
- src/libmaus2/fastx/KmerCount.hpp
- src/libmaus2/gamma/GammaGapEncoder.hpp
- src/libmaus2/gamma/Interval.hpp
- src/libmaus2/gamma/SparseGammaGapConcatDecoder.hpp
- src/libmaus2/gtf/RangeSets.hpp
- src/libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp
- src/libmaus2/lcs/TwoSidedNPL.hpp
- src/libmaus2/lz/StreamWrapperBuffer.hpp
- src/libmaus2/parallel/threadpool/ThreadPool.hpp
- src/libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp
- src/libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp
- + src/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp
- src/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp
- src/libmaus2/parallel/threadpool/bgzf/BgzfInputReadInterface.hpp
- src/libmaus2/parallel/threadpool/bgzf/BgzfInputThreadControl.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/0918694289e240fa642f6fb59d6a889bf864261e

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View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/0918694289e240fa642f6fb59d6a889bf864261e
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