[med-svn] [Git][med-team/phyml][master] 31 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / phyml


Commits:
d6a32a1c by Étienne Mollier at 2021-11-22T23:29:52+01:00
routine-update: New upstream version

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37244647 by Étienne Mollier at 2021-11-22T23:29:53+01:00
New upstream version 3.3.20211118
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c9a2b013 by Étienne Mollier at 2021-11-22T23:30:16+01:00
Update upstream source from tag 'upstream/3.3.20211118'

Update to upstream version '3.3.20211118'
with Debian dir 9bc8479261021f172d71325f3f167e59b322d78b
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8a2cba64 by Étienne Mollier at 2021-11-23T00:01:55+01:00
Delete nodup-am-init-automake.patch: applied upstream

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a2397ccd by Étienne Mollier at 2021-11-23T00:03:51+01:00
Refresh no-configure-ac-date.patch

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583ca2a3 by Étienne Mollier at 2021-11-23T00:04:03+01:00
Refresh no-march-native.patch

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fbe3be1d by Étienne Mollier at 2021-11-23T00:05:13+01:00
Refresh apply-cflags.patch

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0165b30b by Étienne Mollier at 2021-11-23T00:05:28+01:00
Refresh apply-ldflags.patch

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3b8389b0 by Étienne Mollier at 2021-11-23T00:05:43+01:00
Refresh cross.patch

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9d3b31fa by Étienne Mollier at 2021-11-23T00:05:56+01:00
Refresh filter-sse3-intrinsics.patch

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0c590010 by Étienne Mollier at 2021-11-23T00:06:09+01:00
Refresh fix_declaration_of_temp.patch

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95a62ace by Étienne Mollier at 2021-11-23T00:11:52+01:00
update changelog

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831cd2d2 by Étienne Mollier at 2021-11-23T00:16:58+01:00
d/p/apply-ldflags.patch: file DEP3 header

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bcced33b by Étienne Mollier at 2021-11-23T00:51:43+01:00
Add typos.patch, fixing various typos caught by lintian

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9efc87c3 by Étienne Mollier at 2021-11-23T00:54:40+01:00
d/phyml.1: fix typo in manual page caught by lintian

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55932608 by Étienne Mollier at 2022-02-11T15:39:13+01:00
New upstream version 3.3.20211231
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2c856a51 by Étienne Mollier at 2022-02-11T15:39:13+01:00
routine-update: New upstream version

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c558aaa3 by Étienne Mollier at 2022-02-11T15:39:18+01:00
Update upstream source from tag 'upstream/3.3.20211231'

Update to upstream version '3.3.20211231'
with Debian dir fe260589ead8e17386c8f4dd96fd83bee15de08c
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bb6fa889 by Étienne Mollier at 2022-02-11T15:39:21+01:00
Remove duplicate line from changelog.

Changes-By: lintian-brush

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351dafbf by Étienne Mollier at 2022-02-11T15:41:35+01:00
Refresh sse_only_if_supported.patch

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63f6486e by Étienne Mollier at 2022-02-11T15:44:22+01:00
Delete no-stdc++.patch: patched code section disappeared

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1d036719 by Étienne Mollier at 2022-02-11T15:47:50+01:00
Refresh no-configure-ac-date.patch

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a3c1a37d by Étienne Mollier at 2022-02-11T15:48:14+01:00
Refresh fix_wrong_initialisation_of_array.patch

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34d7e1a4 by Étienne Mollier at 2022-02-11T15:48:36+01:00
Refresh cross.patch

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18f41502 by Étienne Mollier at 2022-02-11T15:49:01+01:00
Refresh filter-sse3-intrinsics.patch

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833fdc7c by Étienne Mollier at 2022-02-11T15:49:17+01:00
Refresh typos.patch

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501c097d by Étienne Mollier at 2022-02-11T15:52:41+01:00
update changelog

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c2e3457f by Étienne Mollier at 2022-02-11T16:05:19+01:00
typos.patch: fix new typo

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72641e4a by Étienne Mollier at 2022-02-11T16:06:34+01:00
d/copyright: update copyright year

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8348e2a5 by Étienne Mollier at 2022-02-11T16:37:27+01:00
d/copyright: mention doc/naturemag.bst

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6bd0dc77 by Étienne Mollier at 2022-02-11T16:42:38+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- .travis.yml
- configure.ac
- debian/changelog
- debian/copyright
- debian/patches/apply-cflags.patch
- debian/patches/apply-ldflags.patch
- debian/patches/cross.patch
- debian/patches/filter-sse3-intrinsics.patch
- debian/patches/fix_declaration_of_temp.patch
- debian/patches/fix_wrong_initialisation_of_array.patch
- debian/patches/no-configure-ac-date.patch
- debian/patches/no-march-native.patch
- − debian/patches/no-stdc++.patch
- − debian/patches/nodup-am-init-automake.patch
- debian/patches/series
- debian/patches/sse_only_if_supported.patch
- + debian/patches/typos.patch
- debian/phyml.1
- src/Makefile.am
- src/alrt.c
- src/date.c
- src/free.c
- src/free.h
- src/init.c
- src/io.c
- src/lk.c
- src/main.c
- src/make.c
- src/mcmc.c
- src/mixt.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/phyml/-/compare/31cca59adc28e6e41dab45d45214670e402a3a91...6bd0dc775f47c79d4533984564c03767ab7db94a

-- 
View it on GitLab: https://salsa.debian.org/med-team/phyml/-/compare/31cca59adc28e6e41dab45d45214670e402a3a91...6bd0dc775f47c79d4533984564c03767ab7db94a
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