[med-svn] [Git][med-team/bowtie2][master] 6 commits: New upstream version 2.4.5

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / bowtie2


Commits:
cf277464 by Andreas Tille at 2022-02-17T16:38:51+01:00
New upstream version 2.4.5
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98442b81 by Andreas Tille at 2022-02-17T16:38:51+01:00
routine-update: New upstream version

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bada3ffa by Andreas Tille at 2022-02-17T16:39:15+01:00
Update upstream source from tag 'upstream/2.4.5'

Update to upstream version '2.4.5'
with Debian dir b558c595fb4d1a9d3fe70e3ae0aa5b3a3eede81c
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59a0758a by Andreas Tille at 2022-02-17T16:39:23+01:00
Drop transition for old debug package migration.

Changes-By: lintian-brush

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7b3da54f by Andreas Tille at 2022-02-17T16:46:31+01:00
Update patches

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183889d7 by Andreas Tille at 2022-02-17T16:58:10+01:00
Upload to unstable

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30 changed files:

- .github/workflows/bowtie2.yml
- BOWTIE2_VERSION
- MANUAL
- MANUAL.markdown
- Makefile
- NEWS
- README.md
- aligner_seed.cpp
- aligner_seed.h
- aln_sink.cpp
- blockwise_sa.h
- bowtie2-build
- bt2_build.cpp
- bt2_idx.h
- bt2_inspect.cpp
- bt2_io.cpp
- debian/changelog
- debian/patches/correct_64bit_test
- debian/patches/hardening.patch
- debian/patches/no_sanity
- debian/patches/reproducible.patch
- debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
- debian/patches/use-source-date-epoch-in-Makefile.patch
- debian/rules
- diff_sample.h
- doc/manual.html
- doc/website/manual.ssi
- doc/website/recent_news.ssi
- doc/website/rhsidebar.ssi
- pat.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/a26af0e2d88ccfb7e65b80d82684c33c8c7d8db7...183889d7a5930c34bca7795cb472232581c5f11e

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View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/a26af0e2d88ccfb7e65b80d82684c33c8c7d8db7...183889d7a5930c34bca7795cb472232581c5f11e
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