[med-svn] [Git][med-team/python-pyfaidx][master] 3 commits: Add Recommends on python3-biopython

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / python-pyfaidx


Commits:
5b5a6582 by Nilesh Patra at 2022-02-17T22:51:39+05:30
Add Recommends on python3-biopython

- - - - -
101b321f by Nilesh Patra at 2022-02-17T23:03:49+05:30
Update/fix autopkgtest

- - - - -
9c6f29e2 by Nilesh Patra at 2022-02-17T23:03:49+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/tests/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,7 @@
-python-pyfaidx (0.6.4-1) UNRELEASED; urgency=medium
+python-pyfaidx (0.6.4-1) unstable; urgency=medium
 
+  * Team Upload.
+  [ Andreas Tille ]
   * Fix watchfile to detect new versions on github
   * New upstream version
   * Apply multi-arch hints.
@@ -9,7 +11,16 @@ python-pyfaidx (0.6.4-1) UNRELEASED; urgency=medium
     Remove python3-nose from Build-Depends
   * Simplify build time test
 
- -- Andreas Tille <tille at debian.org>  Thu, 17 Feb 2022 15:12:33 +0100
+  [ Nilesh Patra ]
+  * Add patch to fix FTBFS
+  * Add B-D on python3-biopython
+  * Revert "Update patches"
+  * Properly re-diff locale patch
+  * Add Depends on python3-biopython
+  * Add Depends on python3-biopython
+  * Update/fix autopkgtest
+
+ -- Nilesh Patra <nilesh at debian.org>  Thu, 17 Feb 2022 22:40:38 +0530
 
 python-pyfaidx (0.6.2-1) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -26,7 +26,8 @@ Rules-Requires-Root: no
 Package: python3-pyfaidx
 Architecture: all
 Depends: ${misc:Depends},
-         ${python3:Depends}
+         ${python3:Depends},
+Recommends: python3-biopython
 Description: efficient random access to fasta subsequences for Python 3
  Samtools provides a function "faidx" (FAsta InDeX), which creates a
  small flat index file ".fai" allowing for fast random access to any


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @, python3-nose, python3-numpy
+Depends: @, python3-pytest, python3-numpy, python3-biopython, tabix
 Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,6 +1,8 @@
 #!/bin/bash
 set -e
+
+bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz
 for py in $(py3versions -r 2> /dev/null)
 do echo "Testing with $py in $(pwd):"
-    nosetests3 -v
+    $py -m pytest -v
 done



View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/-/compare/cf2d24aaa46dbdfce4b9336dfb801f514403dd28...9c6f29e2c45b87a55bc8a368e1decf57e2805144

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/-/compare/cf2d24aaa46dbdfce4b9336dfb801f514403dd28...9c6f29e2c45b87a55bc8a368e1decf57e2805144
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