[med-svn] [Git][med-team/pufferfish][master] 6 commits: Fix watch file

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / pufferfish


Commits:
a5dd6dfb by Andreas Tille at 2022-02-20T12:00:31+01:00
Fix watch file

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b5fcc2c5 by Andreas Tille at 2022-02-20T12:01:00+01:00
New upstream version 1.7.0
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a14b9dd6 by Andreas Tille at 2022-02-20T12:01:00+01:00
routine-update: New upstream version

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2527f533 by Andreas Tille at 2022-02-20T12:01:05+01:00
Update upstream source from tag 'upstream/1.7.0'

Update to upstream version '1.7.0'
with Debian dir c057258eeb4e0888a6229c31b4456bafd622b3ac
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184f32d6 by Andreas Tille at 2022-02-20T12:01:05+01:00
routine-update: Standards-Version: 4.6.0

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e7ae2085 by Andreas Tille at 2022-02-20T13:52:13+01:00
Update patches

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28 changed files:

- CMakeLists.txt
- debian/changelog
- debian/control
- debian/patches/use-debian-libs
- debian/watch
- + examples/run_yeast_example.sh
- external/twopaco/graphdump/compact_vector/compact_vector.hpp
- include/CommonTypes.hpp
- include/FastxParser.hpp
- include/FastxParserThreadUtils.hpp
- include/MemChainer.hpp
- include/MemCollector.hpp
- include/Util.hpp
- include/Cedar.hpp → include/cedar/Cedar.hpp
- include/EquivalenceClassBuilder.hpp → include/cedar/EquivalenceClassBuilder.hpp
- include/PuffMappingReader.hpp → include/cedar/PuffMappingReader.hpp
- include/SAMReader.hpp → include/cedar/SAMReader.hpp
- include/TargetGroup.hpp → include/cedar/TargetGroup.hpp
- include/Taxa.h → include/cedar/Taxa.h
- − include/chobo/optional.hpp
- − include/chobo/vector.hpp
- − include/chobo/vector_ptr.hpp
- − include/chobo/vector_view.hpp
- include/compact_vector/compact_iterator.hpp
- include/compact_vector/compact_vector.hpp
- include/concurrentqueue.h
- + include/itlib/dynamic_bitset.hpp
- + include/itlib/expected.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/dd7b8d211152f06dc87002f9b61517e89b9bd683...e7ae20859dcee53779e92964f67a49f37454ad4b

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View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/dd7b8d211152f06dc87002f9b61517e89b9bd683...e7ae20859dcee53779e92964f67a49f37454ad4b
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