[med-svn] [Git][med-team/drop-seq][master] 2 commits: Depending on libbiojava5-java instead of libbiojava4-java

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / drop-seq


Commits:
7eda9a00 by Pierre Gruet at 2022-02-22T21:15:44+01:00
Depending on libbiojava5-java instead of libbiojava4-java

- - - - -
6ee384c5 by Pierre Gruet at 2022-02-22T22:19:15+01:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/drop-seq-tools.manifest
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+drop-seq (2.5.1+dfsg-2) unstable; urgency=medium
+
+  * Team upload
+  * Depending on libbiojava5-java instead of libbiojava4-java
+
+ -- Pierre Gruet <pgt at debian.org>  Tue, 22 Feb 2022 21:15:50 +0100
+
 drop-seq (2.5.1+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ Uploaders: Andreas Tille <tille at debian.org>
 Build-Depends: debhelper-compat (= 13),
                javahelper,
                default-jdk-headless,
-               libbiojava4.0-java,
+               libbiojava5-java,
                libhtsjdk-java,
                libpicard-java,
                libcommons-collections4-java,
@@ -31,7 +31,7 @@ Depends: ${java:Depends},
          default-jre | java-runtime,
          java-wrappers,
          picard-tools,
-         libbiojava4.0-java,
+         libbiojava5-java,
          libpicard-java,
          libcommons-collections4-java,
          libcommons-lang-java,


=====================================
debian/drop-seq-tools.manifest
=====================================
@@ -1,3 +1,3 @@
 usr/share/java/dropseq.jar:
  Main-Class: org.broadinstitute.dropseqrna.cmdline.DropSeqMain
- Class-Path: /usr/share/java/guava.jar /usr/share/java/gson.jar /usr/share/java/htsjdk.jar /usr/share/java/picard.jar /usr/share/java/commons-collections4.jar /usr/share/java/commons-io.jar /usr/share/java/commons-lang.jar /usr/share/java/commons-math3.jar /usr/share/java/barclay.jar /usr/share/java/la4j.jar /usr/share/java/snakeyaml.jar /usr/share/java/biojava4-alignment.jar /usr/share/java/biojava4-core.jar
+ Class-Path: /usr/share/java/guava.jar /usr/share/java/gson.jar /usr/share/java/htsjdk.jar /usr/share/java/picard.jar /usr/share/java/commons-collections4.jar /usr/share/java/commons-io.jar /usr/share/java/commons-lang.jar /usr/share/java/commons-math3.jar /usr/share/java/barclay.jar /usr/share/java/la4j.jar /usr/share/java/snakeyaml.jar /usr/share/java/biojava5-alignment.jar /usr/share/java/biojava5-core.jar


=====================================
debian/rules
=====================================
@@ -17,8 +17,8 @@ override_dh_auto_configure:
 	dh_auto_configure
 	mkdir -p lib/test
 	ln -s /usr/share/java/commons-collections4.jar lib/commons-collections4.jar
-	ln -s /usr/share/java/biojava4-alignment.jar lib/biojava4-alignment.jar
-	ln -s /usr/share/java/biojava4-core.jar lib/biojava4-core.jar
+	ln -s /usr/share/java/biojava5-alignment.jar lib/biojava5-alignment.jar
+	ln -s /usr/share/java/biojava5-core.jar lib/biojava5-core.jar
 	ln -s /usr/share/java/commons-io.jar lib/commons-io.jar
 	ln -s /usr/share/java/commons-lang.jar lib/commons-lang.jar
 	ln -s /usr/share/java/commons-math3.jar lib/commons-math3.jar



View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7...6ee384c53153d64f6960d5c0fd4cd9a5f23c381f

-- 
View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7...6ee384c53153d64f6960d5c0fd4cd9a5f23c381f
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