[med-svn] [Git][med-team/libbio-db-ncbihelper-perl][master] 13 commits: d/control: add myself to uploaders
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Thu Feb 24 20:05:57 GMT 2022
Étienne Mollier pushed to branch master at Debian Med / libbio-db-ncbihelper-perl
Commits:
ebda69cd by Étienne Mollier at 2022-02-24T20:28:29+01:00
d/control: add myself to uploaders
- - - - -
c2fb3fd2 by Étienne Mollier at 2022-02-24T20:30:19+01:00
initialize changelog
- - - - -
1c19ea5f by Étienne Mollier at 2022-02-24T20:30:50+01:00
New upstream version 1.7.7
- - - - -
4ccfa53d by Étienne Mollier at 2022-02-24T20:30:50+01:00
routine-update: New upstream version
- - - - -
9923509c by Étienne Mollier at 2022-02-24T20:30:50+01:00
Update upstream source from tag 'upstream/1.7.7'
Update to upstream version '1.7.7'
with Debian dir 8e5fde27a49158e46acf1024ea5720f6c43185fb
- - - - -
ad64eb59 by Étienne Mollier at 2022-02-24T20:30:50+01:00
routine-update: Standards-Version: 4.6.0
- - - - -
3af53410 by Étienne Mollier at 2022-02-24T20:30:51+01:00
routine-update: debhelper-compat 13
- - - - -
0cde43c2 by Étienne Mollier at 2022-02-24T20:30:54+01:00
routine-update: Rules-Requires-Root: no
- - - - -
9b41a68c by Étienne Mollier at 2022-02-24T20:30:56+01:00
Set upstream metadata fields: Repository.
Changes-By: lintian-brush
- - - - -
4357787e by Étienne Mollier at 2022-02-24T20:31:00+01:00
routine-update: watch file standard 4
- - - - -
a3d93f5d by Étienne Mollier at 2022-02-24T20:40:28+01:00
d/t/control: replace needs-recommends by @builddeps@
This fixes a lintian warning as needs-recommends is an obsoleted
restriction.
- - - - -
7aa60399 by Étienne Mollier at 2022-02-24T20:52:04+01:00
d/copyright: update year
- - - - -
7338e381 by Étienne Mollier at 2022-02-24T20:56:00+01:00
ready changelog to upload to unstable
- - - - -
20 changed files:
- Changes
- LICENSE
- MANIFEST
- META.json
- META.yml
- Makefile.PL
- debian/changelog
- debian/control
- debian/copyright
- debian/tests/control
- debian/upstream/metadata
- debian/watch
- dist.ini
- lib/Bio/DB/EntrezGene.pm
- lib/Bio/DB/GenBank.pm
- lib/Bio/DB/GenPept.pm
- lib/Bio/DB/NCBIHelper.pm
- lib/Bio/DB/Query/GenBank.pm
- lib/Bio/DB/Taxonomy/entrez.pm
- t/Taxonomy.t
Changes:
=====================================
Changes
=====================================
@@ -1,6 +1,9 @@
Summary of important user-visible changes for Bio-DB-NCBIHelper
---------------------------------------------------------------
+1.7.7 2021-06-30 08:52:57-05:00 America/Chicago
+ * Merge pull request to address taxonomic name change, which led to failing network tests (thx @MrCurtis!).
+
1.7.6 2019-12-07 16:11:22-06:00 America/Chicago
* Requires Bio::DB::WebDBSeqI v1.7.7
=====================================
LICENSE
=====================================
@@ -1,4 +1,4 @@
-This software is copyright (c) 2019 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
+This software is copyright (c) 2021 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
--- The GNU General Public License, Version 1, February 1989 ---
-This software is Copyright (c) 2019 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
+This software is Copyright (c) 2021 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
This is free software, licensed under:
@@ -272,7 +272,7 @@ That's all there is to it!
--- The Artistic License 1.0 ---
-This software is Copyright (c) 2019 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
+This software is Copyright (c) 2021 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
This is free software, licensed under:
=====================================
MANIFEST
=====================================
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.017.
Changes
LICENSE
MANIFEST
=====================================
META.json
=====================================
@@ -7,7 +7,7 @@
"Lincoln Stein <lstein at cshl.org>"
],
"dynamic_config" : 0,
- "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010",
+ "generated_by" : "Dist::Zilla version 6.017, CPAN::Meta::Converter version 2.150010",
"license" : [
"perl_5"
],
@@ -81,10 +81,10 @@
"web" : "https://github.com/bioperl/bio-db-ncbihelper"
}
},
- "version" : "1.7.6",
+ "version" : "1.7.7",
"x_Dist_Zilla" : {
"perl" : {
- "version" : "5.028001"
+ "version" : "5.033001"
},
"plugins" : [
{
@@ -101,42 +101,42 @@
}
},
"name" : "@BioPerl/@Filter/GatherDir",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::PruneCruft",
"name" : "@BioPerl/@Filter/PruneCruft",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::ManifestSkip",
"name" : "@BioPerl/@Filter/ManifestSkip",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::MetaYAML",
"name" : "@BioPerl/@Filter/MetaYAML",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::License",
"name" : "@BioPerl/@Filter/License",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::ExtraTests",
"name" : "@BioPerl/@Filter/ExtraTests",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::ExecDir",
"name" : "@BioPerl/@Filter/ExecDir",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::ShareDir",
"name" : "@BioPerl/@Filter/ShareDir",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -146,47 +146,47 @@
}
},
"name" : "@BioPerl/@Filter/MakeMaker",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::Manifest",
"name" : "@BioPerl/@Filter/Manifest",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::TestRelease",
"name" : "@BioPerl/@Filter/TestRelease",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::ConfirmRelease",
"name" : "@BioPerl/@Filter/ConfirmRelease",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::UploadToCPAN",
"name" : "@BioPerl/@Filter/UploadToCPAN",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::MetaConfig",
"name" : "@BioPerl/MetaConfig",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::MetaJSON",
"name" : "@BioPerl/MetaJSON",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::PkgVersion",
"name" : "@BioPerl/PkgVersion",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::PodSyntaxTests",
"name" : "@BioPerl/PodSyntaxTests",
- "version" : "6.012"
+ "version" : "6.017"
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{
"class" : "Dist::Zilla::Plugin::Test::Compile",
@@ -219,7 +219,7 @@
{
"class" : "Dist::Zilla::Plugin::AutoPrereqs",
"name" : "@BioPerl/AutoPrereqs",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::AutoMetaResources",
@@ -229,17 +229,17 @@
{
"class" : "Dist::Zilla::Plugin::MetaResources",
"name" : "@BioPerl/MetaResources",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::Encoding",
"name" : "@BioPerl/Encoding",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::NextRelease",
"name" : "@BioPerl/NextRelease",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::Git::Check",
@@ -256,19 +256,20 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.20.1",
+ "git_version" : "2.28.0",
"repo_root" : "."
}
},
"name" : "@BioPerl/Git::Check",
- "version" : "2.045"
+ "version" : "2.047"
},
{
"class" : "Dist::Zilla::Plugin::Git::Commit",
"config" : {
"Dist::Zilla::Plugin::Git::Commit" : {
"add_files_in" : [],
- "commit_msg" : "v%v%n%n%c"
+ "commit_msg" : "v%V%n%n%c",
+ "signoff" : 0
},
"Dist::Zilla::Role::Git::DirtyFiles" : {
"allow_dirty" : [
@@ -279,7 +280,7 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.20.1",
+ "git_version" : "2.28.0",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -287,7 +288,7 @@
}
},
"name" : "@BioPerl/Git::Commit",
- "version" : "2.045"
+ "version" : "2.047"
},
{
"class" : "Dist::Zilla::Plugin::Git::Tag",
@@ -296,12 +297,12 @@
"branch" : null,
"changelog" : "Changes",
"signed" : 0,
- "tag" : "Bio-DB-NCBIHelper-v1.7.6",
+ "tag" : "Bio-DB-NCBIHelper-v1.7.7",
"tag_format" : "%N-v%v",
"tag_message" : "%N-v%v"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.20.1",
+ "git_version" : "2.28.0",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -309,7 +310,7 @@
}
},
"name" : "@BioPerl/Git::Tag",
- "version" : "2.045"
+ "version" : "2.047"
},
{
"class" : "Dist::Zilla::Plugin::Prereqs",
@@ -320,57 +321,57 @@
}
},
"name" : "Prereqs",
- "version" : "6.012"
+ "version" : "6.017"
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{
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"name" : ":InstallModules",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":IncModules",
- "version" : "6.012"
+ "version" : "6.017"
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{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":TestFiles",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExtraTestFiles",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ExecFiles",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":PerlExecFiles",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":ShareFiles",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":MainModule",
- "version" : "6.012"
+ "version" : "6.017"
},
{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":AllFiles",
- "version" : "6.012"
+ "version" : "6.017"
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{
"class" : "Dist::Zilla::Plugin::FinderCode",
"name" : ":NoFiles",
- "version" : "6.012"
+ "version" : "6.017"
}
],
"zilla" : {
@@ -378,10 +379,11 @@
"config" : {
"is_trial" : 0
},
- "version" : "6.012"
+ "version" : "6.017"
}
},
- "x_generated_by_perl" : "v5.28.1",
- "x_serialization_backend" : "Cpanel::JSON::XS version 4.09"
+ "x_generated_by_perl" : "v5.33.1",
+ "x_serialization_backend" : "Cpanel::JSON::XS version 4.25",
+ "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
}
=====================================
META.yml
=====================================
@@ -17,7 +17,7 @@ build_requires:
configure_requires:
ExtUtils::MakeMaker: '0'
dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.017, CPAN::Meta::Converter version 2.150010'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -51,10 +51,10 @@ resources:
bugtracker: https://github.com/bioperl/bio-db-ncbihelper/issues
homepage: https://metacpan.org/release/Bio-DB-NCBIHelper
repository: git://github.com/bioperl/bio-db-ncbihelper.git
-version: 1.7.6
+version: 1.7.7
x_Dist_Zilla:
perl:
- version: '5.028001'
+ version: '5.033001'
plugins:
-
class: Dist::Zilla::Plugin::GatherDir
@@ -68,74 +68,74 @@ x_Dist_Zilla:
prune_directory: []
root: .
name: '@BioPerl/@Filter/GatherDir'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::PruneCruft
name: '@BioPerl/@Filter/PruneCruft'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::ManifestSkip
name: '@BioPerl/@Filter/ManifestSkip'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::MetaYAML
name: '@BioPerl/@Filter/MetaYAML'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::License
name: '@BioPerl/@Filter/License'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::ExtraTests
name: '@BioPerl/@Filter/ExtraTests'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::ExecDir
name: '@BioPerl/@Filter/ExecDir'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::ShareDir
name: '@BioPerl/@Filter/ShareDir'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::MakeMaker
config:
Dist::Zilla::Role::TestRunner:
default_jobs: 1
name: '@BioPerl/@Filter/MakeMaker'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::Manifest
name: '@BioPerl/@Filter/Manifest'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::TestRelease
name: '@BioPerl/@Filter/TestRelease'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::ConfirmRelease
name: '@BioPerl/@Filter/ConfirmRelease'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::UploadToCPAN
name: '@BioPerl/@Filter/UploadToCPAN'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::MetaConfig
name: '@BioPerl/MetaConfig'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::MetaJSON
name: '@BioPerl/MetaJSON'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::PkgVersion
name: '@BioPerl/PkgVersion'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::PodSyntaxTests
name: '@BioPerl/PodSyntaxTests'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::Test::Compile
config:
@@ -161,7 +161,7 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::AutoPrereqs
name: '@BioPerl/AutoPrereqs'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::AutoMetaResources
name: '@BioPerl/AutoMetaResources'
@@ -169,15 +169,15 @@ x_Dist_Zilla:
-
class: Dist::Zilla::Plugin::MetaResources
name: '@BioPerl/MetaResources'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::Encoding
name: '@BioPerl/Encoding'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::NextRelease
name: '@BioPerl/NextRelease'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::Git::Check
config:
@@ -190,16 +190,17 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.20.1
+ git_version: 2.28.0
repo_root: .
name: '@BioPerl/Git::Check'
- version: '2.045'
+ version: '2.047'
-
class: Dist::Zilla::Plugin::Git::Commit
config:
Dist::Zilla::Plugin::Git::Commit:
add_files_in: []
- commit_msg: v%v%n%n%c
+ commit_msg: v%V%n%n%c
+ signoff: '0'
Dist::Zilla::Role::Git::DirtyFiles:
allow_dirty:
- Changes
@@ -207,12 +208,12 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.20.1
+ git_version: 2.28.0
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Commit'
- version: '2.045'
+ version: '2.047'
-
class: Dist::Zilla::Plugin::Git::Tag
config:
@@ -220,16 +221,16 @@ x_Dist_Zilla:
branch: ~
changelog: Changes
signed: 0
- tag: Bio-DB-NCBIHelper-v1.7.6
+ tag: Bio-DB-NCBIHelper-v1.7.7
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
- git_version: 2.20.1
+ git_version: 2.28.0
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
name: '@BioPerl/Git::Tag'
- version: '2.045'
+ version: '2.047'
-
class: Dist::Zilla::Plugin::Prereqs
config:
@@ -237,51 +238,52 @@ x_Dist_Zilla:
phase: runtime
type: requires
name: Prereqs
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':InstallModules'
- version: '6.012'
+ version: '6.017'
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class: Dist::Zilla::Plugin::FinderCode
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+ version: '6.017'
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class: Dist::Zilla::Plugin::FinderCode
name: ':TestFiles'
- version: '6.012'
+ version: '6.017'
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class: Dist::Zilla::Plugin::FinderCode
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+ version: '6.017'
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class: Dist::Zilla::Plugin::FinderCode
name: ':ExecFiles'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':PerlExecFiles'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':ShareFiles'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':MainModule'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':AllFiles'
- version: '6.012'
+ version: '6.017'
-
class: Dist::Zilla::Plugin::FinderCode
name: ':NoFiles'
- version: '6.012'
+ version: '6.017'
zilla:
class: Dist::Zilla::Dist::Builder
config:
is_trial: '0'
- version: '6.012'
-x_generated_by_perl: v5.28.1
+ version: '6.017'
+x_generated_by_perl: v5.33.1
x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'
=====================================
Makefile.PL
=====================================
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.017.
use strict;
use warnings;
@@ -55,7 +55,7 @@ my %WriteMakefileArgs = (
"Test::Most" => 0,
"Test::RequiresInternet" => 0
},
- "VERSION" => "1.7.6",
+ "VERSION" => "1.7.7",
"test" => {
"TESTS" => "t/*.t"
}
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+libbio-db-ncbihelper-perl (1.7.7-1) unstable; urgency=medium
+
+ [ Andreas Tille ]
+ * Add salsa-ci.yml
+
+ [ Étienne Mollier ]
+ * d/control: add myself to uploaders
+ * New upstream version
+ * Standards-Version: 4.6.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * watch file standard 4 (routine-update)
+ * d/t/control: replace needs-recommends by @builddeps@
+ * d/copyright: update year
+
+ -- Étienne Mollier <emollier at debian.org> Thu, 24 Feb 2022 20:55:23 +0100
+
libbio-db-ncbihelper-perl (1.7.6-4) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -1,9 +1,10 @@
Source: libbio-db-ncbihelper-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Michael R. Crusoe <crusoe at debian.org>
+Uploaders: Michael R. Crusoe <crusoe at debian.org>,
+ Étienne Mollier <emollier at debian.org>
Section: perl
Priority: optional
-Build-Depends: debhelper-compat (= 12)
+Build-Depends: debhelper-compat (= 13)
Build-Depends-Indep: libbio-perl-perl,
libbio-asn1-entrezgene-perl ( >> 1.730 ),
libcache-cache-perl,
@@ -16,10 +17,11 @@ Build-Depends-Indep: libbio-perl-perl,
libwww-perl,
libxml-twig-perl,
perl
-Standards-Version: 4.4.1
+Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl.git
Homepage: https://metacpan.org/release/Bio-DB-NCBIHelper
+Rules-Requires-Root: no
Package: libbio-db-ncbihelper-perl
Architecture: all
=====================================
debian/copyright
=====================================
@@ -4,15 +4,17 @@ Upstream-Contact: Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at a
Upstream-Name: Bio-DB-NCBIHelper
Files: *
-Copyright: Aaron Mackey <amackey at virginia.edu>
- Brian Osborne <bosborne at alum.mit.edu>
- Jason Stajich <jason at bioperl.org>
- Lincoln Stein <lstein at cshl.org>
+Copyright: (c) 2021 Aaron Mackey <amackey at virginia.edu>
+ (c) 2021 Brian Osborne <bosborne at alum.mit.edu>
+ (c) 2021 Jason Stajich <jason at bioperl.org>
+ (c) 2021 Lincoln Stein <lstein at cshl.org>
(c) 2003 Cold Spring Harbor Laboratory
License: Artistic or GPL-1+
Files: debian/*
-Copyright: 2019, Michael R. Crusoe <michael.crusoe at gmail.com>
+Copyright: 2019-2020, Michael R. Crusoe <michael.crusoe at gmail.com>,
+ 2019-2021, Andreas Tille <tille at debian.org>,
+ 2021-2022, Étienne Mollier <emollier at debian.org>
License: Artistic or GPL-1+
License: Artistic
=====================================
debian/tests/control
=====================================
@@ -14,6 +14,6 @@ Restrictions: skippable, superficial
Features: test-name=autodep8-perl
Test-Command: /usr/share/pkg-perl-autopkgtest/runner runtime-deps-and-recommends
-Depends: @, pkg-perl-autopkgtest
-Restrictions: needs-recommends, skippable, superficial
+Depends: @, @builddeps@, pkg-perl-autopkgtest
+Restrictions: skippable, superficial
Features: test-name=autodep8-perl-recommends
=====================================
debian/upstream/metadata
=====================================
@@ -1,5 +1,5 @@
Archive: CPAN
Bug-Database: https://github.com/bioperl/bio-db-ncbihelper/issues
Bug-Submit: bioperl-l at bioperl.org
-Repository: git://github.com/bioperl/bio-db-ncbihelper.git
+Repository: https://github.com/bioperl/bio-db-ncbihelper.git
Repository-Browse: https://github.com/bioperl/bio-db-ncbihelper
=====================================
debian/watch
=====================================
@@ -1,2 +1,2 @@
-version=3
+version=4
https://metacpan.org/release/Bio-DB-NCBIHelper .*/Bio-DB-NCBIHelper-v?(\d[\d.-]*)\.(?:tar(?:\.gz|\.bz2)?|tgz|zip)$
=====================================
dist.ini
=====================================
@@ -1,5 +1,5 @@
name = Bio-DB-NCBIHelper
-version = 1.7.6
+version = 1.7.7
author = Aaron Mackey <amackey at virginia.edu>
author = Brian Osborne <bosborne at alum.mit.edu>
author = Jason Stajich <jason at bioperl.org>
=====================================
lib/Bio/DB/EntrezGene.pm
=====================================
@@ -93,7 +93,7 @@ methods. Internal methods are usually preceded with a _
# Let the code begin...
package Bio::DB::EntrezGene;
-$Bio::DB::EntrezGene::VERSION = '1.7.6';
+$Bio::DB::EntrezGene::VERSION = '1.7.7';
use strict;
use vars qw($DEFAULTFORMAT $DEFAULTMODE %PARAMSTRING);
=====================================
lib/Bio/DB/GenBank.pm
=====================================
@@ -165,7 +165,7 @@ preceded with a _
# Let the code begin...
package Bio::DB::GenBank;
-$Bio::DB::GenBank::VERSION = '1.7.6';
+$Bio::DB::GenBank::VERSION = '1.7.7';
use strict;
use vars qw(%PARAMSTRING $DEFAULTFORMAT $DEFAULTMODE);
=====================================
lib/Bio/DB/GenPept.pm
=====================================
@@ -93,7 +93,7 @@ methods. Internal methods are usually preceded with a _
# Let the code begin...
package Bio::DB::GenPept;
-$Bio::DB::GenPept::VERSION = '1.7.6';
+$Bio::DB::GenPept::VERSION = '1.7.7';
use strict;
use vars qw($DEFAULTFORMAT $DEFAULTMODE %PARAMSTRING);
=====================================
lib/Bio/DB/NCBIHelper.pm
=====================================
@@ -85,7 +85,7 @@ preceded with a _
# Let the code begin...
package Bio::DB::NCBIHelper;
-$Bio::DB::NCBIHelper::VERSION = '1.7.6';
+$Bio::DB::NCBIHelper::VERSION = '1.7.7';
use strict;
use Bio::DB::Query::GenBank;
=====================================
lib/Bio/DB/Query/GenBank.pm
=====================================
@@ -96,7 +96,7 @@ preceded with a _
# Let the code begin...
package Bio::DB::Query::GenBank;
-$Bio::DB::Query::GenBank::VERSION = '1.7.6';
+$Bio::DB::Query::GenBank::VERSION = '1.7.7';
use strict;
use URI::Escape 'uri_unescape';
use Bio::DB::NCBIHelper;
=====================================
lib/Bio/DB/Taxonomy/entrez.pm
=====================================
@@ -101,7 +101,7 @@ Internal methods are usually preceded with a _
# Let the code begin...
package Bio::DB::Taxonomy::entrez;
-$Bio::DB::Taxonomy::entrez::VERSION = '1.7.6';
+$Bio::DB::Taxonomy::entrez::VERSION = '1.7.7';
use vars qw($EntrezLocation $UrlParamSeparatorValue %EntrezParams
$EntrezGet $EntrezSummary $EntrezFetch %SequenceParams
$XMLTWIG $DATA_CACHE $RELATIONS);
=====================================
t/Taxonomy.t
=====================================
@@ -99,7 +99,7 @@ if (defined $ENV{BIOPERLEMAIL}) {
sleep(3);
ok $n = $db->get_Taxonomy_Node('1760');
- is $n->scientific_name, 'Actinobacteria';
+ is $n->scientific_name, 'Actinomycetia';
sleep(3);
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl/-/compare/8423bc0e7096d2c53b740269632639941b49f871...7338e38133893857c4c042b64869d5673be57091
--
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl/-/compare/8423bc0e7096d2c53b740269632639941b49f871...7338e38133893857c4c042b64869d5673be57091
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