[med-svn] [Git][med-team/libbio-db-ncbihelper-perl][upstream] New upstream version 1.7.7

Étienne Mollier (@emollier) gitlab at salsa.debian.org
Thu Feb 24 20:06:09 GMT 2022



Étienne Mollier pushed to branch upstream at Debian Med / libbio-db-ncbihelper-perl


Commits:
1c19ea5f by Étienne Mollier at 2022-02-24T20:30:50+01:00
New upstream version 1.7.7
- - - - -


14 changed files:

- Changes
- LICENSE
- MANIFEST
- META.json
- META.yml
- Makefile.PL
- dist.ini
- lib/Bio/DB/EntrezGene.pm
- lib/Bio/DB/GenBank.pm
- lib/Bio/DB/GenPept.pm
- lib/Bio/DB/NCBIHelper.pm
- lib/Bio/DB/Query/GenBank.pm
- lib/Bio/DB/Taxonomy/entrez.pm
- t/Taxonomy.t


Changes:

=====================================
Changes
=====================================
@@ -1,6 +1,9 @@
 Summary of important user-visible changes for Bio-DB-NCBIHelper
 ---------------------------------------------------------------
 
+1.7.7     2021-06-30 08:52:57-05:00 America/Chicago
+  * Merge pull request to address taxonomic name change, which led to failing network tests (thx @MrCurtis!).
+
 1.7.6     2019-12-07 16:11:22-06:00 America/Chicago
   * Requires Bio::DB::WebDBSeqI v1.7.7
 


=====================================
LICENSE
=====================================
@@ -1,4 +1,4 @@
-This software is copyright (c) 2019 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
+This software is copyright (c) 2021 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
 
 This is free software; you can redistribute it and/or modify it under
 the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
 
 --- The GNU General Public License, Version 1, February 1989 ---
 
-This software is Copyright (c) 2019 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
+This software is Copyright (c) 2021 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
 
 This is free software, licensed under:
 
@@ -272,7 +272,7 @@ That's all there is to it!
 
 --- The Artistic License 1.0 ---
 
-This software is Copyright (c) 2019 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
+This software is Copyright (c) 2021 by Aaron Mackey <amackey at virginia.edu>, Brian Osborne <bosborne at alum.mit.edu>, Jason Stajich <jason at bioperl.org>, Lincoln Stein <lstein at cshl.org>.
 
 This is free software, licensed under:
 


=====================================
MANIFEST
=====================================
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.017.
 Changes
 LICENSE
 MANIFEST


=====================================
META.json
=====================================
@@ -7,7 +7,7 @@
       "Lincoln Stein <lstein at cshl.org>"
    ],
    "dynamic_config" : 0,
-   "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010",
+   "generated_by" : "Dist::Zilla version 6.017, CPAN::Meta::Converter version 2.150010",
    "license" : [
       "perl_5"
    ],
@@ -81,10 +81,10 @@
          "web" : "https://github.com/bioperl/bio-db-ncbihelper"
       }
    },
-   "version" : "1.7.6",
+   "version" : "1.7.7",
    "x_Dist_Zilla" : {
       "perl" : {
-         "version" : "5.028001"
+         "version" : "5.033001"
       },
       "plugins" : [
          {
@@ -101,42 +101,42 @@
                }
             },
             "name" : "@BioPerl/@Filter/GatherDir",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::PruneCruft",
             "name" : "@BioPerl/@Filter/PruneCruft",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::ManifestSkip",
             "name" : "@BioPerl/@Filter/ManifestSkip",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::MetaYAML",
             "name" : "@BioPerl/@Filter/MetaYAML",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::License",
             "name" : "@BioPerl/@Filter/License",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::ExtraTests",
             "name" : "@BioPerl/@Filter/ExtraTests",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::ExecDir",
             "name" : "@BioPerl/@Filter/ExecDir",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::ShareDir",
             "name" : "@BioPerl/@Filter/ShareDir",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::MakeMaker",
@@ -146,47 +146,47 @@
                }
             },
             "name" : "@BioPerl/@Filter/MakeMaker",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::Manifest",
             "name" : "@BioPerl/@Filter/Manifest",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::TestRelease",
             "name" : "@BioPerl/@Filter/TestRelease",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::ConfirmRelease",
             "name" : "@BioPerl/@Filter/ConfirmRelease",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::UploadToCPAN",
             "name" : "@BioPerl/@Filter/UploadToCPAN",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::MetaConfig",
             "name" : "@BioPerl/MetaConfig",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::MetaJSON",
             "name" : "@BioPerl/MetaJSON",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::PkgVersion",
             "name" : "@BioPerl/PkgVersion",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::PodSyntaxTests",
             "name" : "@BioPerl/PodSyntaxTests",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::Test::Compile",
@@ -219,7 +219,7 @@
          {
             "class" : "Dist::Zilla::Plugin::AutoPrereqs",
             "name" : "@BioPerl/AutoPrereqs",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::AutoMetaResources",
@@ -229,17 +229,17 @@
          {
             "class" : "Dist::Zilla::Plugin::MetaResources",
             "name" : "@BioPerl/MetaResources",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::Encoding",
             "name" : "@BioPerl/Encoding",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::NextRelease",
             "name" : "@BioPerl/NextRelease",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::Git::Check",
@@ -256,19 +256,20 @@
                   "changelog" : "Changes"
                },
                "Dist::Zilla::Role::Git::Repo" : {
-                  "git_version" : "2.20.1",
+                  "git_version" : "2.28.0",
                   "repo_root" : "."
                }
             },
             "name" : "@BioPerl/Git::Check",
-            "version" : "2.045"
+            "version" : "2.047"
          },
          {
             "class" : "Dist::Zilla::Plugin::Git::Commit",
             "config" : {
                "Dist::Zilla::Plugin::Git::Commit" : {
                   "add_files_in" : [],
-                  "commit_msg" : "v%v%n%n%c"
+                  "commit_msg" : "v%V%n%n%c",
+                  "signoff" : 0
                },
                "Dist::Zilla::Role::Git::DirtyFiles" : {
                   "allow_dirty" : [
@@ -279,7 +280,7 @@
                   "changelog" : "Changes"
                },
                "Dist::Zilla::Role::Git::Repo" : {
-                  "git_version" : "2.20.1",
+                  "git_version" : "2.28.0",
                   "repo_root" : "."
                },
                "Dist::Zilla::Role::Git::StringFormatter" : {
@@ -287,7 +288,7 @@
                }
             },
             "name" : "@BioPerl/Git::Commit",
-            "version" : "2.045"
+            "version" : "2.047"
          },
          {
             "class" : "Dist::Zilla::Plugin::Git::Tag",
@@ -296,12 +297,12 @@
                   "branch" : null,
                   "changelog" : "Changes",
                   "signed" : 0,
-                  "tag" : "Bio-DB-NCBIHelper-v1.7.6",
+                  "tag" : "Bio-DB-NCBIHelper-v1.7.7",
                   "tag_format" : "%N-v%v",
                   "tag_message" : "%N-v%v"
                },
                "Dist::Zilla::Role::Git::Repo" : {
-                  "git_version" : "2.20.1",
+                  "git_version" : "2.28.0",
                   "repo_root" : "."
                },
                "Dist::Zilla::Role::Git::StringFormatter" : {
@@ -309,7 +310,7 @@
                }
             },
             "name" : "@BioPerl/Git::Tag",
-            "version" : "2.045"
+            "version" : "2.047"
          },
          {
             "class" : "Dist::Zilla::Plugin::Prereqs",
@@ -320,57 +321,57 @@
                }
             },
             "name" : "Prereqs",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":InstallModules",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":IncModules",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":TestFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":ExtraTestFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":ExecFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":PerlExecFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":ShareFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":MainModule",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":AllFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          },
          {
             "class" : "Dist::Zilla::Plugin::FinderCode",
             "name" : ":NoFiles",
-            "version" : "6.012"
+            "version" : "6.017"
          }
       ],
       "zilla" : {
@@ -378,10 +379,11 @@
          "config" : {
             "is_trial" : 0
          },
-         "version" : "6.012"
+         "version" : "6.017"
       }
    },
-   "x_generated_by_perl" : "v5.28.1",
-   "x_serialization_backend" : "Cpanel::JSON::XS version 4.09"
+   "x_generated_by_perl" : "v5.33.1",
+   "x_serialization_backend" : "Cpanel::JSON::XS version 4.25",
+   "x_spdx_expression" : "Artistic-1.0-Perl OR GPL-1.0-or-later"
 }
 


=====================================
META.yml
=====================================
@@ -17,7 +17,7 @@ build_requires:
 configure_requires:
   ExtUtils::MakeMaker: '0'
 dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010'
+generated_by: 'Dist::Zilla version 6.017, CPAN::Meta::Converter version 2.150010'
 license: perl
 meta-spec:
   url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -51,10 +51,10 @@ resources:
   bugtracker: https://github.com/bioperl/bio-db-ncbihelper/issues
   homepage: https://metacpan.org/release/Bio-DB-NCBIHelper
   repository: git://github.com/bioperl/bio-db-ncbihelper.git
-version: 1.7.6
+version: 1.7.7
 x_Dist_Zilla:
   perl:
-    version: '5.028001'
+    version: '5.033001'
   plugins:
     -
       class: Dist::Zilla::Plugin::GatherDir
@@ -68,74 +68,74 @@ x_Dist_Zilla:
           prune_directory: []
           root: .
       name: '@BioPerl/@Filter/GatherDir'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::PruneCruft
       name: '@BioPerl/@Filter/PruneCruft'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::ManifestSkip
       name: '@BioPerl/@Filter/ManifestSkip'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::MetaYAML
       name: '@BioPerl/@Filter/MetaYAML'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::License
       name: '@BioPerl/@Filter/License'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::ExtraTests
       name: '@BioPerl/@Filter/ExtraTests'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::ExecDir
       name: '@BioPerl/@Filter/ExecDir'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::ShareDir
       name: '@BioPerl/@Filter/ShareDir'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::MakeMaker
       config:
         Dist::Zilla::Role::TestRunner:
           default_jobs: 1
       name: '@BioPerl/@Filter/MakeMaker'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::Manifest
       name: '@BioPerl/@Filter/Manifest'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::TestRelease
       name: '@BioPerl/@Filter/TestRelease'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::ConfirmRelease
       name: '@BioPerl/@Filter/ConfirmRelease'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::UploadToCPAN
       name: '@BioPerl/@Filter/UploadToCPAN'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::MetaConfig
       name: '@BioPerl/MetaConfig'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::MetaJSON
       name: '@BioPerl/MetaJSON'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::PkgVersion
       name: '@BioPerl/PkgVersion'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::PodSyntaxTests
       name: '@BioPerl/PodSyntaxTests'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::Test::Compile
       config:
@@ -161,7 +161,7 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::AutoPrereqs
       name: '@BioPerl/AutoPrereqs'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::AutoMetaResources
       name: '@BioPerl/AutoMetaResources'
@@ -169,15 +169,15 @@ x_Dist_Zilla:
     -
       class: Dist::Zilla::Plugin::MetaResources
       name: '@BioPerl/MetaResources'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::Encoding
       name: '@BioPerl/Encoding'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::NextRelease
       name: '@BioPerl/NextRelease'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::Git::Check
       config:
@@ -190,16 +190,17 @@ x_Dist_Zilla:
           allow_dirty_match: []
           changelog: Changes
         Dist::Zilla::Role::Git::Repo:
-          git_version: 2.20.1
+          git_version: 2.28.0
           repo_root: .
       name: '@BioPerl/Git::Check'
-      version: '2.045'
+      version: '2.047'
     -
       class: Dist::Zilla::Plugin::Git::Commit
       config:
         Dist::Zilla::Plugin::Git::Commit:
           add_files_in: []
-          commit_msg: v%v%n%n%c
+          commit_msg: v%V%n%n%c
+          signoff: '0'
         Dist::Zilla::Role::Git::DirtyFiles:
           allow_dirty:
             - Changes
@@ -207,12 +208,12 @@ x_Dist_Zilla:
           allow_dirty_match: []
           changelog: Changes
         Dist::Zilla::Role::Git::Repo:
-          git_version: 2.20.1
+          git_version: 2.28.0
           repo_root: .
         Dist::Zilla::Role::Git::StringFormatter:
           time_zone: local
       name: '@BioPerl/Git::Commit'
-      version: '2.045'
+      version: '2.047'
     -
       class: Dist::Zilla::Plugin::Git::Tag
       config:
@@ -220,16 +221,16 @@ x_Dist_Zilla:
           branch: ~
           changelog: Changes
           signed: 0
-          tag: Bio-DB-NCBIHelper-v1.7.6
+          tag: Bio-DB-NCBIHelper-v1.7.7
           tag_format: '%N-v%v'
           tag_message: '%N-v%v'
         Dist::Zilla::Role::Git::Repo:
-          git_version: 2.20.1
+          git_version: 2.28.0
           repo_root: .
         Dist::Zilla::Role::Git::StringFormatter:
           time_zone: local
       name: '@BioPerl/Git::Tag'
-      version: '2.045'
+      version: '2.047'
     -
       class: Dist::Zilla::Plugin::Prereqs
       config:
@@ -237,51 +238,52 @@ x_Dist_Zilla:
           phase: runtime
           type: requires
       name: Prereqs
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':InstallModules'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':IncModules'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':TestFiles'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':ExtraTestFiles'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':ExecFiles'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':PerlExecFiles'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':ShareFiles'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':MainModule'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':AllFiles'
-      version: '6.012'
+      version: '6.017'
     -
       class: Dist::Zilla::Plugin::FinderCode
       name: ':NoFiles'
-      version: '6.012'
+      version: '6.017'
   zilla:
     class: Dist::Zilla::Dist::Builder
     config:
       is_trial: '0'
-    version: '6.012'
-x_generated_by_perl: v5.28.1
+    version: '6.017'
+x_generated_by_perl: v5.33.1
 x_serialization_backend: 'YAML::Tiny version 1.73'
+x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'


=====================================
Makefile.PL
=====================================
@@ -1,4 +1,4 @@
-# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.012.
+# This file was automatically generated by Dist::Zilla::Plugin::MakeMaker v6.017.
 use strict;
 use warnings;
 
@@ -55,7 +55,7 @@ my %WriteMakefileArgs = (
     "Test::Most" => 0,
     "Test::RequiresInternet" => 0
   },
-  "VERSION" => "1.7.6",
+  "VERSION" => "1.7.7",
   "test" => {
     "TESTS" => "t/*.t"
   }


=====================================
dist.ini
=====================================
@@ -1,5 +1,5 @@
 name = Bio-DB-NCBIHelper
-version = 1.7.6
+version = 1.7.7
 author = Aaron Mackey <amackey at virginia.edu>
 author = Brian Osborne <bosborne at alum.mit.edu>
 author = Jason Stajich <jason at bioperl.org>


=====================================
lib/Bio/DB/EntrezGene.pm
=====================================
@@ -93,7 +93,7 @@ methods. Internal methods are usually preceded with a _
 # Let the code begin...
 
 package Bio::DB::EntrezGene;
-$Bio::DB::EntrezGene::VERSION = '1.7.6';
+$Bio::DB::EntrezGene::VERSION = '1.7.7';
 use strict;
 use vars qw($DEFAULTFORMAT $DEFAULTMODE %PARAMSTRING);
 


=====================================
lib/Bio/DB/GenBank.pm
=====================================
@@ -165,7 +165,7 @@ preceded with a _
 # Let the code begin...
 
 package Bio::DB::GenBank;
-$Bio::DB::GenBank::VERSION = '1.7.6';
+$Bio::DB::GenBank::VERSION = '1.7.7';
 use strict;
 use vars qw(%PARAMSTRING $DEFAULTFORMAT $DEFAULTMODE);
 


=====================================
lib/Bio/DB/GenPept.pm
=====================================
@@ -93,7 +93,7 @@ methods. Internal methods are usually preceded with a _
 # Let the code begin...
 
 package Bio::DB::GenPept;
-$Bio::DB::GenPept::VERSION = '1.7.6';
+$Bio::DB::GenPept::VERSION = '1.7.7';
 use strict;
 use vars qw($DEFAULTFORMAT $DEFAULTMODE %PARAMSTRING);
 


=====================================
lib/Bio/DB/NCBIHelper.pm
=====================================
@@ -85,7 +85,7 @@ preceded with a _
 # Let the code begin...
 
 package Bio::DB::NCBIHelper;
-$Bio::DB::NCBIHelper::VERSION = '1.7.6';
+$Bio::DB::NCBIHelper::VERSION = '1.7.7';
 use strict;
 
 use Bio::DB::Query::GenBank;


=====================================
lib/Bio/DB/Query/GenBank.pm
=====================================
@@ -96,7 +96,7 @@ preceded with a _
 # Let the code begin...
 
 package Bio::DB::Query::GenBank;
-$Bio::DB::Query::GenBank::VERSION = '1.7.6';
+$Bio::DB::Query::GenBank::VERSION = '1.7.7';
 use strict;
 use URI::Escape 'uri_unescape';
 use Bio::DB::NCBIHelper;


=====================================
lib/Bio/DB/Taxonomy/entrez.pm
=====================================
@@ -101,7 +101,7 @@ Internal methods are usually preceded with a _
 # Let the code begin...
 
 package Bio::DB::Taxonomy::entrez;
-$Bio::DB::Taxonomy::entrez::VERSION = '1.7.6';
+$Bio::DB::Taxonomy::entrez::VERSION = '1.7.7';
 use vars qw($EntrezLocation $UrlParamSeparatorValue %EntrezParams
             $EntrezGet $EntrezSummary $EntrezFetch %SequenceParams
             $XMLTWIG $DATA_CACHE $RELATIONS);


=====================================
t/Taxonomy.t
=====================================
@@ -99,7 +99,7 @@ if (defined $ENV{BIOPERLEMAIL}) {
     sleep(3);
 
     ok $n = $db->get_Taxonomy_Node('1760');
-    is $n->scientific_name, 'Actinobacteria';
+    is $n->scientific_name, 'Actinomycetia';
 
     sleep(3);
 



View it on GitLab: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl/-/commit/1c19ea5fa6374e00e7bf06cd9f223ddd54a02aae

-- 
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl/-/commit/1c19ea5fa6374e00e7bf06cd9f223ddd54a02aae
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220224/754454e1/attachment-0001.htm>


More information about the debian-med-commit mailing list