Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e1df9fa5 by Andreas Tille at 2022-01-01T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,65 +1,63 @@
-Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
+Last-Update: Sat, 01 Jan 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 103 | {covid-19,practice,imaging} |
- orthanc-wsi | 53 | {covid-19,oncology,his,laboratory,practice,imaging} |
+ dcmtk | 174 | {imaging,covid-19} |
+ orthanc | 103 | {covid-19,imaging,practice} |
+ orthanc-wsi | 53 | {oncology,laboratory,practice,his,covid-19,imaging} |
htsjdk | 30 | {bio-dev} |
- dicom3tools | 24 | {imaging} |
- amide | 23 | {imaging} |
+ dicom3tools | 25 | {imaging} |
+ amide | 24 | {imaging} |
dcm2niix | 22 | {imaging} |
- dicomscope | 20 | {imaging} |
+ dicomscope | 22 | {imaging} |
+ orthanc-webviewer | 16 | {imaging} |
+ gdcm | 15 | {covid-19,imaging} |
gnumed-server | 15 | {covid-19,practice} |
- gdcm | 14 | {imaging,covid-19} |
+ minc-tools | 14 | {imaging} |
ngs-sdk | 14 | {bio-dev} |
- orthanc-webviewer | 14 | {imaging} |
adun.app | 13 | {bio} |
- minc-tools | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
- pixelmed | 12 | {imaging} |
+ openslide | 12 | {imaging} |
+ dicomnifti | 11 | {imaging} |
invesalius | 11 | {imaging} |
- openslide | 11 | {imaging} |
- dicomnifti | 10 | {imaging} |
- gdcm | 9 | {imaging-dev} |
- jebl2 | 8 | {bio-dev} |
+ gdcm | 10 | {imaging-dev} |
+ nifticlib | 9 | {imaging} |
libminc | 8 | {imaging-dev} |
- nifticlib | 8 | {imaging} |
+ plastimatch | 8 | {imaging} |
+ jebl2 | 7 | {bio-dev} |
+ king | 7 | {typesetting,imaging} |
mia | 7 | {imaging} |
+ mrtrix3 | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
nifticlib | 7 | {imaging-dev} |
- plastimatch | 7 | {imaging} |
biojava-live | 6 | {bio-dev} |
- king | 6 | {typesetting,imaging} |
- mrtrix3 | 6 | {imaging} |
+ nifti2dicom | 6 | {imaging} |
openslide | 6 | {imaging-dev} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
+ orthanc-dicomweb | 6 | {imaging,covid-19} |
+ orthanc-postgresql | 6 | {imaging} |
lagan | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- nifti2dicom | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
- salmon | 5 | {bio,covid-19} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
+ nipype | 5 | {imaging,imaging-dev} |
+ oscar | 5 | {data,tools,practice} |
+ salmon | 5 | {covid-19,bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
libdivsufsort | 4 | {bio-dev} |
nifti2dicom | 4 | {imaging} |
- nipype | 4 | {imaging,imaging-dev} |
- oscar | 4 | {data,tools,practice} |
bart-view | 3 | {imaging} |
- bio-tradis | 3 | {bio,bio-dev} |
+ bio-tradis | 3 | {bio-dev,bio} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
dicompyler | 3 | {oncology} |
- embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
embassy-domalign | 3 | {cloud,bio} |
- libncl | 3 | {bio} |
obitools | 3 | {bio} |
orthanc-mysql | 3 | {imaging} |
orthanc-python | 3 | {covid-19} |
pymia | 3 | {imaging-dev} |
tracetuner | 3 | {bio} |
- treeview | 3 | {bio,bio-phylogeny} |
anfo | 2 | {bio,cloud} |
- arden | 2 | {bio,cloud} |
+ arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
@@ -67,12 +65,13 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
cat-bat | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
elastix | 2 | {imaging} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
jellyfish1 | 2 | {bio} |
+ libncl | 2 | {bio} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
- melting | 2 | {cloud,bio} |
+ melting | 2 | {bio,cloud} |
mhap | 2 | {bio,bio-ngs} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
@@ -86,16 +85,17 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
sift | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
stacks | 2 | {bio} |
+ treeview | 2 | {bio,bio-phylogeny} |
tvc | 2 | {bio} |
varna | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ zalign | 2 | {bio,cloud} |
atropos | 1 | {bio} |
- clonalframeml | 1 | {bio,covid-19} |
+ clonalframeml | 1 | {covid-19,bio} |
cmtk | 1 | {imaging} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
- delly | 1 | {covid-19,bio} |
- dextractor | 1 | {bio,covid-19} |
+ delly | 1 | {bio,covid-19} |
+ dextractor | 1 | {covid-19,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
getdata | 1 | {bio} |
@@ -107,19 +107,18 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
lamarc | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libncl | 1 | {bio-dev} |
libpal-java | 1 | {bio-dev} |
libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
mauve-aligner | 1 | {bio} |
microbegps | 1 | {bio} |
- phyutility | 1 | {cloud,bio} |
+ phyutility | 1 | {bio,cloud} |
pique | 1 | {bio} |
placnet | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
- proalign | 1 | {bio,bio-phylogeny} |
+ proalign | 1 | {bio-phylogeny,bio} |
qcumber | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rtax | 1 | {cloud,bio} |
@@ -129,16 +128,16 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
skesa | 1 | {bio} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
sprai | 1 | {bio} |
staden | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {bio,covid-19} |
+ thesias | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- varscan | 1 | {covid-19,bio} |
- acedb | 0 | {cloud,bio} |
+ varscan | 1 | {bio,covid-19} |
+ acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -151,7 +150,7 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
- intake | 0 | {bio-dev,bio} |
+ intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
@@ -167,10 +166,11 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
+ libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
@@ -181,7 +181,7 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
@@ -191,7 +191,7 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -199,11 +199,11 @@ Last-Update: Sat, 01 Jan 2022 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
- vienna-rna | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
- tipp | -1 | {covid-19,bio} |
+ tipp | -1 | {bio,covid-19} |
(233 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e1df9fa50d47fdae0fea5e9385cb6deb2fe775ce
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e1df9fa50d47fdae0fea5e9385cb6deb2fe775ce
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