Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e0b9d8e8 by Andreas Tille at 2022-01-02T04:44:53+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,209 +1,2 @@
-Last-Update: Sat, 01 Jan 2022 13:42:04 +0000
-
- Source | Vote | Tasks | Tags
--------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 174 | {imaging,covid-19} |
- orthanc | 103 | {covid-19,imaging,practice} |
- orthanc-wsi | 53 | {oncology,laboratory,practice,his,covid-19,imaging} |
- htsjdk | 30 | {bio-dev} |
- dicom3tools | 25 | {imaging} |
- amide | 24 | {imaging} |
- dcm2niix | 22 | {imaging} |
- dicomscope | 22 | {imaging} |
- orthanc-webviewer | 16 | {imaging} |
- gdcm | 15 | {covid-19,imaging} |
- gnumed-server | 15 | {covid-19,practice} |
- minc-tools | 14 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
- adun.app | 13 | {bio} |
- pixelmed | 13 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
- openslide | 12 | {imaging} |
- dicomnifti | 11 | {imaging} |
- invesalius | 11 | {imaging} |
- gdcm | 10 | {imaging-dev} |
- nifticlib | 9 | {imaging} |
- libminc | 8 | {imaging-dev} |
- plastimatch | 8 | {imaging} |
- jebl2 | 7 | {bio-dev} |
- king | 7 | {typesetting,imaging} |
- mia | 7 | {imaging} |
- mrtrix3 | 7 | {imaging} |
- ngs-sdk | 7 | {bio-dev} |
- nifticlib | 7 | {imaging-dev} |
- biojava-live | 6 | {bio-dev} |
- nifti2dicom | 6 | {imaging} |
- openslide | 6 | {imaging-dev} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
- orthanc-postgresql | 6 | {imaging} |
- lagan | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
- nipype | 5 | {imaging,imaging-dev} |
- oscar | 5 | {data,tools,practice} |
- salmon | 5 | {covid-19,bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- libdivsufsort | 4 | {bio-dev} |
- nifti2dicom | 4 | {imaging} |
- bart-view | 3 | {imaging} |
- bio-tradis | 3 | {bio-dev,bio} |
- bitseq | 3 | {bio} |
- brig | 3 | {bio} |
- dicompyler | 3 | {oncology} |
- embassy-domainatrix | 3 | {bio,cloud} |
- embassy-domalign | 3 | {cloud,bio} |
- obitools | 3 | {bio} |
- orthanc-mysql | 3 | {imaging} |
- orthanc-python | 3 | {covid-19} |
- pymia | 3 | {imaging-dev} |
- tracetuner | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
- arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- biomaj3-cli | 2 | {cloud} |
- blimps | 2 | {bio} |
- canu | 2 | {bio} |
- cat-bat | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
- elastix | 2 | {imaging} |
- embassy-domsearch | 2 | {bio,cloud} |
- fastml | 2 | {bio} |
- gatb-core | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
- libncl | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- melting | 2 | {bio,cloud} |
- mhap | 2 | {bio,bio-ngs} |
- orthanc-gdcm | 2 | {imaging} |
- papyrus | 2 | {imaging-dev} |
- pigx-rnaseq | 2 | {bio,covid-19} |
- piler | 2 | {bio} |
- pscan-chip | 2 | {bio} |
- rambo-k | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- runcircos-gui | 2 | {bio} |
- sibsim4 | 2 | {bio,cloud} |
- sift | 2 | {bio} |
- spread-phy | 2 | {bio,bio-phylogeny} |
- stacks | 2 | {bio} |
- treeview | 2 | {bio,bio-phylogeny} |
- tvc | 2 | {bio} |
- varna | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
- atropos | 1 | {bio} |
- clonalframeml | 1 | {covid-19,bio} |
- cmtk | 1 | {imaging} |
- ctn | 1 | {imaging-dev} |
- cufflinks | 1 | {bio,cloud} |
- delly | 1 | {bio,covid-19} |
- dextractor | 1 | {covid-19,bio} |
- emboss-explorer | 1 | {bio} |
- emmax | 1 | {bio} |
- getdata | 1 | {bio} |
- ghmm | 1 | {bio} |
- hinge | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
- kmerresistance | 1 | {bio} |
- lamarc | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
- libctapimkt | 1 | {practice} |
- libpal-java | 1 | {bio-dev} |
- libsbml | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
- mauve-aligner | 1 | {bio} |
- microbegps | 1 | {bio} |
- phyutility | 1 | {bio,cloud} |
- pique | 1 | {bio} |
- placnet | 1 | {bio} |
- plasmidid | 1 | {covid-19,bio} |
- plasmidseeker | 1 | {bio} |
- pplacer | 1 | {covid-19,bio,bio-phylogeny} |
- proalign | 1 | {bio-phylogeny,bio} |
- qcumber | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
- saint | 1 | {bio} |
- sga | 1 | {bio} |
- shovill | 1 | {covid-19,bio} |
- skesa | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
- sprai | 1 | {bio} |
- staden | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {covid-19,bio} |
- trace2dbest | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
- acedb | 0 | {bio,cloud} |
- bambamc | 0 | {bio-dev} |
- biojava4-live | 0 | {bio-dev} |
- biosyntax | 0 | {bio} |
- bmtk | 0 | {psychology} |
- camp | 0 | {imaging-dev} |
- cutesv | 0 | {bio} |
- eegdev | 0 | {imaging-dev} |
- emperor | 0 | {bio} |
- fis-gtm | 0 | {his} |
- gatb-core | 0 | {bio-dev} |
- gifticlib | 0 | {imaging-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
- intake | 0 | {bio,bio-dev} |
- libbigwig | 0 | {bio-dev} |
- libbioparser-dev | 0 | {bio-dev} |
- libbpp-core | 0 | {bio-dev} |
- libbpp-phyl | 0 | {bio-dev} |
- libbpp-phyl-omics | 0 | {bio-dev} |
- libbpp-popgen | 0 | {bio-dev} |
- libbpp-raa | 0 | {bio-dev} |
- libbpp-seq | 0 | {bio-dev} |
- libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
- libgenome | 0 | {bio-dev} |
- libgkarrays | 0 | {bio-dev} |
- libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
- libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
- libmems | 0 | {bio-dev} |
- libmialm | 0 | {imaging-dev} |
- libmuscle | 0 | {bio-dev} |
- libncl | 0 | {bio-dev} |
- libpsortb | 0 | {bio-dev} |
- libqes | 0 | {bio-dev} |
- libseqlib | 0 | {bio-dev} |
- libstatgen | 0 | {bio-dev} |
- libxdf | 0 | {imaging-dev} |
- metaphlan2 | 0 | {bio} |
- metastudent-data | 0 | {bio} |
- metastudent-data-2 | 0 | {bio} |
- mia | 0 | {imaging-dev} |
- miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
- ncbi-vdb | 0 | {bio-dev} |
- nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
- opensurgsim | 0 | {imaging-dev} |
- orthanc-imagej | 0 | {imaging} |
- parallel-fastq-dump | 0 | {covid-19} |
- pbcopper | 0 | {bio-dev} |
- pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
- python-wdlparse | 0 | {bio-dev} |
- resfinder-db | 0 | {bio} |
- sbmltoolbox | 0 | {bio-dev} |
- seq-gen | 0 | {bio} |
- simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
- srf | 0 | {bio-dev} |
- vienna-rna | 0 | {covid-19,bio} |
- xdffileio | 0 | {imaging-dev} |
- xxsds-dynamic | 0 | {bio-dev} |
- mssstest | -1 | {tools} |
- sight | -1 | {imaging-dev} |
- tipp | -1 | {bio,covid-19} |
-(233 rows)
+Last-Update: Sun, 02 Jan 2022 01:42:03 +0000
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e0b9d8e80123dcfbb07b9cd2a8ca76772e64f9d7
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