[med-svn] [Git][med-team/kmc][master] 19 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / kmc


Commits:
2a4251fe by Étienne Mollier at 2022-01-15T21:02:13+01:00
routine-update: New upstream version

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6b67d568 by Étienne Mollier at 2022-01-15T21:02:14+01:00
New upstream version 3.2.1+dfsg
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eed2f9ed by Étienne Mollier at 2022-01-15T21:02:19+01:00
Update upstream source from tag 'upstream/3.2.1+dfsg'

Update to upstream version '3.2.1+dfsg'
with Debian dir a3099832d6573efec8c33a78cadad62d76aa88cb
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d7cedc87 by Étienne Mollier at 2022-01-15T21:02:42+01:00
Add missing build dependency on dh addon.

Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html

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9bb70e44 by Étienne Mollier at 2022-01-15T21:02:59+01:00
Drop transition for old debug package migration.

Changes-By: lintian-brush

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9281f226 by Étienne Mollier at 2022-01-15T21:03:54+01:00
d/copyright: update Files-Excluded pattern list

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bc99000d by Étienne Mollier at 2022-01-15T21:30:02+01:00
Refresh use-shared-libs patch

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67428c4c by Étienne Mollier at 2022-01-15T21:30:17+01:00
Refresh makefile.patch

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feaf61ec by Étienne Mollier at 2022-01-15T21:30:30+01:00
Refresh 0005-Add-static-library-target-to-makefile.patch

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84327f49 by Étienne Mollier at 2022-01-15T21:30:49+01:00
Refresh newish_gcc_build_fix.patch

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4aaa0f8f by Étienne Mollier at 2022-01-15T21:31:16+01:00
Refresh disable-python-bindings.patch

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96489f64 by Étienne Mollier at 2022-01-15T21:31:39+01:00
Refresh spelling.patch

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531b188b by Étienne Mollier at 2022-01-15T21:31:56+01:00
Refresh simde patch

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06541b8b by Étienne Mollier at 2022-01-15T21:42:19+01:00
Refresh support-mixed-march.patch

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2aca69ab by Étienne Mollier at 2022-01-15T22:27:39+01:00
Put back missing libkmc.a to "all" target

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8e746105 by Étienne Mollier at 2022-01-15T22:28:16+01:00
Put back line lost during simde patch refresh

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999465e4 by Étienne Mollier at 2022-01-15T23:42:22+01:00
d/t/build-lib: adjust autopkgtest to limitiations

The limitations are imposed through hardwired checks in the code.
There are two of them: the reserved memory must be 2Gio minimum,
and the used of 128 threads maximum.

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1b580302 by Étienne Mollier at 2022-01-15T23:46:32+01:00
update changelog

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bc0d17a3 by Étienne Mollier at 2022-01-15T23:54:52+01:00
d/ch: added todo

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30 changed files:

- + .github/workflows/main.yml
- makefile → Makefile
- README.md
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/0005-Add-static-library-target-to-makefile.patch
- debian/patches/disable-python-bindings.patch
- debian/patches/makefile.patch
- debian/patches/newish_gcc_build_fix.patch
- debian/patches/simde
- debian/patches/spelling.patch
- debian/patches/support-mixed-march.patch
- debian/patches/use-shared-libs
- debian/rules
- debian/tests/build-lib
- kmer_counter.sln → kmc.sln
- + kmc_CLI/kmc.cpp
- + kmc_CLI/kmc_CLI.vcxproj
- + kmc_CLI/kmc_CLI.vcxproj.filters
- + kmc_CLI/kmc_CLI.vcxproj.user
- kmc_api/kmc_file.cpp
- kmc_api/kmc_file.h
- kmc_api/kmer_api.cpp
- kmc_api/kmer_api.h
- kmc_api/kmer_defs.h
- kmc_api/mmer.cpp
- kmc_api/mmer.h
- − kmc_api/stdafx.h
- kmer_counter/bam_utils.h → kmc_core/bam_utils.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kmc/-/compare/51faa852691347fb79dbb82d45668974de501f93...bc0d17a3c5b851ad3188941104c367f401165bd4

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View it on GitLab: https://salsa.debian.org/med-team/kmc/-/compare/51faa852691347fb79dbb82d45668974de501f93...bc0d17a3c5b851ad3188941104c367f401165bd4
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