[med-svn] [Git][med-team/drop-seq][master] 6 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / drop-seq


Commits:
52492edb by Andreas Tille at 2022-01-16T16:24:49+01:00
routine-update: New upstream version

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06561ca1 by Andreas Tille at 2022-01-16T16:25:01+01:00
New upstream version 2.5.1+dfsg
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2d6ab431 by Andreas Tille at 2022-01-16T16:27:58+01:00
Update upstream source from tag 'upstream/2.5.1+dfsg'

Update to upstream version '2.5.1+dfsg'
with Debian dir 33709cc1f24224ccfaad2821c7da8ab49983d97b
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fafa4f58 by Andreas Tille at 2022-01-16T16:29:26+01:00
Add missing build dependency on dh addon.

Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html

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fe0d9771 by Andreas Tille at 2022-01-16T16:45:31+01:00
Upstream has applied biojava4 patch

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6516ceee by Andreas Tille at 2022-01-16T16:52:21+01:00
Upload to unstable

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30 changed files:

- build.xml
- debian/changelog
- debian/control
- − debian/patches/biojava4_packages.patch
- debian/patches/series
- src/ant/defs.xml
- src/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtils.java
- src/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlat.java
- src/java/org/broadinstitute/dropseqrna/annotation/GTFParser.java
- src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java
- src/java/org/broadinstitute/dropseqrna/annotation/GTFRecord.java
- src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java
- src/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReader.java
- src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java
- src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java
- src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequency.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReader.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyWriter.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/BestSampleAssignmentForCell.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellAssignmentUtils.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellContaminationParser.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollection.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoublets.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/IntervalAndFrequencyResult.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignments.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCell.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilities.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/36456acfdf120d9ba5f1fec7e61ef1407ff543ff...6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7

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View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/36456acfdf120d9ba5f1fec7e61ef1407ff543ff...6516ceee3eef7626d9eb59981a9ffc04dd8fe2a7
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