[med-svn] [Git][med-team/drop-seq][upstream] New upstream version 2.5.1+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / drop-seq


Commits:
06561ca1 by Andreas Tille at 2022-01-16T16:25:01+01:00
New upstream version 2.5.1+dfsg
- - - - -


26 changed files:

- build.xml
- src/ant/defs.xml
- src/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtils.java
- src/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlat.java
- src/java/org/broadinstitute/dropseqrna/annotation/GTFParser.java
- src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java
- src/java/org/broadinstitute/dropseqrna/annotation/GTFRecord.java
- src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java
- src/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReader.java
- src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java
- src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java
- src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequency.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReader.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyWriter.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/BestSampleAssignmentForCell.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellAssignmentUtils.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellContaminationParser.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollection.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoublets.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/IntervalAndFrequencyResult.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignments.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCell.java
- + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilities.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/06561ca1202505fc3ed17b96e303f57e66dacb62

-- 
View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/06561ca1202505fc3ed17b96e303f57e66dacb62
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220116/a106faeb/attachment.htm>