[med-svn] [Git][med-team/rna-star][master] 5 commits: New upstream version 2.7.10a+dfsg

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / rna-star


Commits:
19c5ccad by Nilesh Patra at 2022-01-16T21:58:42+05:30
New upstream version 2.7.10a+dfsg
- - - - -
df449d09 by Nilesh Patra at 2022-01-16T21:58:44+05:30
Update upstream source from tag 'upstream/2.7.10a+dfsg'

Update to upstream version '2.7.10a+dfsg'
with Debian dir c831772c398f1667a181a8af401ebfa02ea2bb64
- - - - -
d2842201 by Nilesh Patra at 2022-01-16T22:05:38+05:30
Refresh patches

- - - - -
057d8179 by Nilesh Patra at 2022-01-16T22:19:18+05:30
Skip seeking GIT_BRANCH_COMMIT_DIFF

- - - - -
615d35fd by Nilesh Patra at 2022-01-16T22:19:18+05:30
Upload to unstable

- - - - -


30 changed files:

- − .travis.yml
- CHANGES.md
- README.md
- RELEASEnotes.md
- debian/changelog
- debian/patches/do-not-enforce-avx2.patch
- debian/patches/donotuse_own_htslib.patch
- debian/patches/mathRoutinesNotInScope.patch
- debian/patches/mips_shm_noreserve.patch
- debian/patches/reproducible.patch
- doc/STARmanual.pdf
- docs/STARsolo.md
- extras/doc-latex/STARmanual.tex
- extras/doc-latex/convertParDefToLatexTable.awk
- extras/doc-latex/parametersDefault.tex
- extras/docker/Dockerfile
- + extras/parameters/ENCODE.txt
- + extras/scripts/soloCompareMtx.awk
- + extras/scripts/soloCountMatrixFromBAM.awk
- + extras/scripts/soloExtractFiltCells.awk
- extras/scripts/calcUMIperCell.awk → extras/scripts/soloUMIperCell.awk
- + extras/tests/scripts/checkCellReadsStats.awk
- + extras/tests/scripts/checkCellReadsStats_vsBAM.awk
- + extras/tests/scripts/checkCellReadsStats_vsMatrix.awk
- source/Genome.cpp
- source/IncludeDefine.h
- source/Makefile
- source/Parameters.cpp
- source/Parameters.h
- source/ParametersClip_initialize.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/rna-star/-/compare/51fadded0d67b96a83f8a23d4ab86cb993f36ba3...615d35fd7d791f5ecec584ec6142282fc70c6aad

-- 
View it on GitLab: https://salsa.debian.org/med-team/rna-star/-/compare/51fadded0d67b96a83f8a23d4ab86cb993f36ba3...615d35fd7d791f5ecec584ec6142282fc70c6aad
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220116/3bbd7f89/attachment.htm>