[med-svn] [Git][med-team/snpeff][master] 17 commits: Using tags instead of releases in d/watch

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / snpeff


Commits:
44477ade by Pierre Gruet at 2022-01-23T15:18:37+01:00
Using tags instead of releases in d/watch

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5560aa4e by Pierre Gruet at 2022-01-23T15:19:03+01:00
Preparing to repack for next upstream version

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de2848b6 by Pierre Gruet at 2022-01-23T15:19:25+01:00
New upstream version 5.1+dfsg
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225042a6 by Pierre Gruet at 2022-01-23T15:21:45+01:00
Update upstream source from tag 'upstream/5.1+dfsg'

Update to upstream version '5.1+dfsg'
with Debian dir 175a1d358c5ef274b3594eec0ce8996514008181
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753828c2 by Pierre Gruet at 2022-01-29T08:03:16+01:00
Updating dependencies list and related Maven rules, notably switching to junit5

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c0c63c70 by Pierre Gruet at 2022-01-29T08:04:08+01:00
The path of the config file in the source has moved

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927014f2 by Pierre Gruet at 2022-01-29T08:05:31+01:00
Now the version number is properly filed in pom.xml

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0666c5ba by Pierre Gruet at 2022-01-29T08:07:18+01:00
Removing now useless patches

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f9dfd2ce by Pierre Gruet at 2022-01-29T08:08:51+01:00
Simplifying patch to modify the pom with the lowercase artifactId

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83bc8e73 by Pierre Gruet at 2022-01-29T08:10:43+01:00
Refreshing patch for the launching script and config file

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af35b2a3 by Pierre Gruet at 2022-01-29T14:04:38+01:00
Using Debian-packaged biojava4 instead of biojava6, previously upstream used biojava3

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72c6f2c6 by Pierre Gruet at 2022-01-29T14:08:47+01:00
Moving the test classes under src/test and running unit tests only

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d9c4e584 by Pierre Gruet at 2022-01-29T14:09:08+01:00
Disabling tests needing files that are not available

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07168482 by Pierre Gruet at 2022-01-29T14:09:59+01:00
Marking the doc package as Multi-Arch: foreign

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fab32cc8 by Pierre Gruet at 2022-01-29T14:11:34+01:00
Updating changelog

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9f0be6b6 by Pierre Gruet at 2022-01-29T14:20:36+01:00
Refreshing d/copyright

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8a6e5f9d by Pierre Gruet at 2022-01-29T15:15:29+01:00
Adding a Lintian override for a file with very-long-lines

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30 changed files:

- .classpath
- .gitignore
- + .idea/.gitignore
- + .idea/SnpEff.iml
- + .idea/compiler.xml
- + .idea/encodings.xml
- + .idea/inspectionProfiles/Project_Default.xml
- + .idea/inspectionProfiles/profiles_settings.xml
- + .idea/jarRepositories.xml
- + .idea/libraries/Maven__com_fasterxml_jackson_core_jackson_annotations_2_10_5.xml
- + .idea/libraries/Maven__com_fasterxml_jackson_core_jackson_core_2_10_5.xml
- + .idea/libraries/Maven__com_fasterxml_jackson_core_jackson_databind_2_10_5.xml
- + .idea/libraries/Maven__com_github_samtools_htsjdk_2_24_1.xml
- + .idea/libraries/Maven__com_google_code_gson_gson_2_8_7.xml
- + .idea/libraries/Maven__com_googlecode_charts4j_charts4j_1_3.xml
- + .idea/libraries/Maven__com_sun_activation_jakarta_activation_1_2_2.xml
- + .idea/libraries/Maven__com_sun_istack_istack_commons_runtime_3_0_12.xml
- + .idea/libraries/Maven__commons_cli_commons_cli_1_5_0.xml
- + .idea/libraries/Maven__commons_codec_commons_codec_1_15.xml
- + .idea/libraries/Maven__commons_io_commons_io_2_11_0.xml
- + .idea/libraries/Maven__commons_lang_commons_lang_2_4.xml
- + .idea/libraries/Maven__commons_logging_commons_logging_1_1_1.xml
- + .idea/libraries/Maven__distlib_distlib_0_9_1.xml
- + .idea/libraries/Maven__gov_nih_nlm_ncbi_ngs_java_2_9_0.xml
- + .idea/libraries/Maven__jakarta_xml_bind_jakarta_xml_bind_api_2_3_3.xml
- + .idea/libraries/Maven__java3d_vecmath_1_3_1.xml
- + .idea/libraries/Maven__javax_activation_javax_activation_api_1_2_0.xml
- + .idea/libraries/Maven__javax_annotation_javax_annotation_api_1_3_2.xml
- + .idea/libraries/Maven__javax_xml_bind_jaxb_api_2_3_1.xml
- + .idea/libraries/Maven__net_sf_trove4j_trove4j_3_0_2.xml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6cff9ccaa34c86af8cd975565267bff523a74aba...8a6e5f9df6dcd3a9662b1c52c18ed6dac838599d

-- 
View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6cff9ccaa34c86af8cd975565267bff523a74aba...8a6e5f9df6dcd3a9662b1c52c18ed6dac838599d
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