[med-svn] [Git][med-team/snakemake][master] 8 commits: New upstream version 6.14.0

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch master at Debian Med / snakemake


Commits:
1ee51741 by Rebecca N. Palmer at 2022-01-26T21:13:21+00:00
New upstream version 6.14.0
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6dcfe9a3 by Rebecca N. Palmer at 2022-01-26T21:13:41+00:00
Update upstream source from tag 'upstream/6.14.0'

Update to upstream version '6.14.0'
with Debian dir 7329283f68b9c62ad76d7b9a8b8c85ecd9bbd8cf
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f760386e by Rebecca N. Palmer at 2022-01-26T21:21:19+00:00
Refresh patches, update d/copyright.

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9b185d7a by Rebecca N. Palmer at 2022-01-30T21:52:50+00:00
Split up the binary package (main, -doc, -testsuite) to save space;
Tests: skip a new conda-using test, mark as needs-internet.

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7afabe43 by Rebecca N. Palmer at 2022-01-30T21:58:37+00:00
Don't ship the test suite, as some of it doesn't work from a
non-writable directory.

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40b69ed4 by Rebecca N. Palmer at 2022-01-31T19:29:48+00:00
Tests: copy the test tree to avoid writing to it.

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a3140fc0 by Rebecca N. Palmer at 2022-01-31T21:12:34+00:00
Reproducibility: fix sphinx locale, skip a test that fails under faketime..

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1f4fb628 by Rebecca N. Palmer at 2022-01-31T21:43:14+00:00
salsa-ci: ignore expected Lintian error.

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30 changed files:

- CHANGELOG.md
- debian/changelog
- debian/control
- debian/copyright
- − debian/docs
- debian/patches/fix_test_pytest.patch
- debian/patches/python3.patch
- debian/patches/remove_ccbysa_snippets.patch
- debian/patches/reproducible-build.patch
- debian/patches/test_from_any_directory.patch
- debian/rules
- debian/salsa-ci.yml
- debian/snakemake.doc-base → debian/snakemake-doc.doc-base
- + debian/snakemake-doc.install
- debian/snakemake.links → debian/snakemake-doc.links
- debian/tests/control
- debian/tests/run-unit-test
- docs/getting_started/installation.rst
- docs/project_info/more_resources.rst
- docs/snakefiles/deployment.rst
- docs/snakefiles/modularization.rst
- snakemake/__init__.py
- snakemake/_version.py
- snakemake/benchmark.py
- snakemake/caching/local.py
- snakemake/common/__init__.py
- snakemake/cwl.py
- snakemake/dag.py
- snakemake/deployment/conda.py
- snakemake/deployment/containerize.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/b21b17a19edfe96b420dfa874189529faeea8637...1f4fb628f59ccd70805ff2be59ff504b23b67a13

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/b21b17a19edfe96b420dfa874189529faeea8637...1f4fb628f59ccd70805ff2be59ff504b23b67a13
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