[med-svn] [Git][med-team/hyphy][upstream] New upstream version 2.5.40+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / hyphy


Commits:
baa2765e by Étienne Mollier at 2022-07-15T09:59:56+02:00
New upstream version 2.5.40+dfsg
- - - - -


30 changed files:

- CMakeLists.txt
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/MSS-selector-2.bf
- res/TemplateBatchFiles/MSS-selector.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/calcnode.cpp
- src/core/formula.cpp
- src/core/global_things.cpp
- src/core/hbl_env.cpp
- src/core/include/formula.h
- src/core/include/hbl_env.h
- src/core/include/matrix.h
- src/core/include/operation.h
- src/core/likefunc.cpp
- src/core/matrix.cpp
- src/core/operation.cpp
- src/core/tree.cpp
- src/core/variablecontainer.cpp
- + tests/data/Bacterial_PTS_trehalose_transporter_suIII.nex
- tests/data/COXI.nex → tests/data/COXI.mtnex
- + tests/data/HIVvif.masked_nex


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/baa2765edf42b9dec634b57bd008b7407827d213

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