[med-svn] [Git][med-team/bedops][upstream] New upstream version 2.4.41+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / bedops


Commits:
3888d415 by Andreas Tille at 2022-07-18T10:00:42+02:00
New upstream version 2.4.41+dfsg
- - - - -


30 changed files:

- .github/workflows/main.yml
- CHANGELOG.md
- CITATION.cff
- Makefile
- README.md
- applications/bed/bedextract/src/ExtractRows.cpp
- applications/bed/bedmap/src/Bedmap.cpp
- applications/bed/bedmap/src/Input.hpp
- applications/bed/bedmap/src/TDefs.hpp
- applications/bed/bedops/src/BedPadReader.hpp
- applications/bed/bedops/src/Bedops.cpp
- applications/bed/bedops/src/Input.hpp
- applications/bed/bedops/test/TestPlan.xml
- applications/bed/closestfeats/src/BedReader.hpp
- applications/bed/closestfeats/src/ClosestFeature.cpp
- applications/bed/closestfeats/src/Input.hpp
- applications/bed/closestfeats/src/Printers.hpp
- applications/bed/conversion/src/convert2bed.c
- applications/bed/conversion/src/convert2bed.h
- applications/bed/conversion/src/wrappers/gtf2bed
- applications/bed/conversion/src/wrappers/gtf2starch
- applications/bed/sort-bed/src/CheckSort.cpp
- applications/bed/sort-bed/src/Sort.cpp
- applications/bed/sort-bed/src/SortDetails.cpp
- applications/bed/sort-bed/src/Structures.hpp
- applications/bed/sort-bed/src/update-sort-bed-migrate-candidates.py
- applications/bed/sort-bed/src/update-sort-bed-slurm.py
- applications/bed/sort-bed/src/update-sort-bed-starch-slurm.py
- applications/bed/starch/src/Makefile.darwin
- applications/bed/starch/src/starch-diff.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bedops/-/commit/3888d415ba430b67f86c7f356d38195ee53e6456

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