Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
eb7ec4ac by Andreas Tille at 2022-06-12T13:42:27+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,2 +1,194 @@
-Last-Update: Sun, 12 Jun 2022 01:42:04 +0000
+Last-Update: Sun, 12 Jun 2022 13:42:04 +0000
+
+ Source | Vote | Tasks | Tags
+-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
+ dcmtk | 168 | {covid-19,imaging} |
+ orthanc | 94 | {imaging,covid-19,practice} |
+ orthanc-wsi | 48 | {covid-19,imaging,his,laboratory,oncology,practice} |
+ node-shiny-server | 41 | {covid-19,epi} |
+ amide | 24 | {imaging} |
+ dicomscope | 21 | {imaging} |
+ dicom3tools | 19 | {imaging} |
+ orthanc-webviewer | 16 | {imaging} |
+ gnumed-server | 14 | {practice,covid-19} |
+ gdcm | 12 | {imaging-dev} |
+ invesalius | 12 | {imaging} |
+ orthanc-dicomweb | 12 | {covid-19,imaging} |
+ biojava-live | 10 | {bio-dev} |
+ gdcm | 10 | {imaging,covid-19} |
+ nipype | 8 | {imaging-dev,imaging} |
+ pixelmed | 8 | {imaging} |
+ adun.app | 7 | {bio} |
+ mrtrix3 | 7 | {imaging} |
+ librg-utils-perl | 6 | {bio} |
+ obitools | 6 | {bio} |
+ orthanc-postgresql | 6 | {imaging} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ canu | 5 | {bio} |
+ elastix | 5 | {imaging} |
+ jebl2 | 5 | {bio-dev} |
+ libminc | 5 | {imaging-dev} |
+ nifti2dicom | 5 | {imaging} |
+ orthanc-gdcm | 5 | {imaging} |
+ orthanc-mysql | 5 | {imaging} |
+ plastimatch | 5 | {imaging} |
+ pymia | 5 | {imaging-dev} |
+ salmon | 5 | {bio,covid-19} |
+ staden | 5 | {bio} |
+ getdata | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ king | 4 | {typesetting,imaging} |
+ lamarc | 4 | {bio} |
+ libsbml | 4 | {bio-dev} |
+ mia | 4 | {imaging} |
+ oscar | 4 | {tools,practice,data} |
+ python-wdlparse | 4 | {bio-dev} |
+ rdp-alignment | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ stacks | 4 | {bio} |
+ anfo | 3 | {cloud,bio} |
+ arden | 3 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ bart-view | 3 | {imaging} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
+ biomaj3-cli | 3 | {cloud} |
+ bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
+ cat-bat | 3 | {covid-19,bio} |
+ clonalframeml | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
+ cmtk | 3 | {imaging} |
+ delly | 3 | {bio,covid-19} |
+ dicompyler | 3 | {oncology} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ fastml | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ hinge | 3 | {bio} |
+ ipig | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
+ libbio-mage-utils-perl | 3 | {bio-dev} |
+ libdivsufsort | 3 | {bio-dev} |
+ libncl | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ mauve-aligner | 3 | {bio} |
+ melting | 3 | {bio,cloud} |
+ mhap | 3 | {bio,bio-ngs} |
+ phyutility | 3 | {bio,cloud} |
+ piler | 3 | {bio} |
+ placnet | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
+ sga | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ sprai | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
+ trace2dbest | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ tvc | 3 | {bio} |
+ varna | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
+ blimps | 2 | {bio} |
+ dextractor | 2 | {covid-19,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {bio,cloud} |
+ emmax | 2 | {bio} |
+ htscodecs | 2 | {bio-dev,covid-19} |
+ kmerresistance | 2 | {bio} |
+ libchado-perl | 2 | {bio-dev} |
+ libgenome | 2 | {bio-dev} |
+ metaphlan2 | 2 | {bio} |
+ orthanc-python | 2 | {covid-19} |
+ papyrus | 2 | {imaging-dev} |
+ plasmidseeker | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ qcumber | 2 | {bio} |
+ sift | 2 | {bio} |
+ skesa | 2 | {bio} |
+ thesias | 2 | {bio,covid-19} |
+ tophat-recondition | 2 | {covid-19,bio} |
+ acedb | 1 | {bio,cloud} |
+ bambamc | 1 | {bio-dev} |
+ ctn | 1 | {imaging-dev} |
+ cufflinks | 1 | {cloud,bio} |
+ cutesv | 1 | {bio} |
+ emboss-explorer | 1 | {bio} |
+ emperor | 1 | {bio} |
+ gatb-core | 1 | {bio-dev} |
+ insighttoolkit5 | 1 | {imaging-dev} |
+ libbigwig | 1 | {bio-dev} |
+ libbpp-core | 1 | {bio-dev} |
+ libbpp-phyl | 1 | {bio-dev} |
+ libbpp-phyl-omics | 1 | {bio-dev} |
+ libbpp-popgen | 1 | {bio-dev} |
+ libbpp-raa | 1 | {bio-dev} |
+ libbpp-seq | 1 | {bio-dev} |
+ libbpp-seq-omics | 1 | {bio-dev} |
+ libctapimkt | 1 | {practice} |
+ libgkarrays | 1 | {bio-dev} |
+ libhmsbeagle | 1 | {bio-dev} |
+ libmems | 1 | {bio-dev} |
+ libmuscle | 1 | {bio-dev} |
+ libxdf | 1 | {imaging-dev} |
+ microbegps | 1 | {bio} |
+ mssstest | 1 | {tools} |
+ opencfu | 1 | {laboratory} |
+ pbseqlib | 1 | {bio-dev} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
+ pique | 1 | {bio} |
+ plasmidid | 1 | {bio,covid-19} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ seq-gen | 1 | {bio} |
+ srf | 1 | {bio-dev} |
+ tipp | 1 | {covid-19,bio} |
+ varscan | 1 | {bio,covid-19} |
+ vienna-rna | 1 | {bio,covid-19} |
+ biojava4-live | 0 | {bio-dev} |
+ biosyntax | 0 | {bio} |
+ camp | 0 | {imaging-dev} |
+ eegdev | 0 | {imaging-dev} |
+ fis-gtm | 0 | {his} |
+ libbioparser-dev | 0 | {bio-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
+ libjloda-java | 0 | {bio-dev} |
+ libmialm | 0 | {imaging-dev} |
+ libncl | 0 | {bio-dev} |
+ libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
+ libvistaio | 0 | {imaging-dev} |
+ megadepth | 0 | {bio} |
+ metastudent-data | 0 | {bio} |
+ metastudent-data-2 | 0 | {bio} |
+ mia | 0 | {imaging-dev} |
+ miaviewit | 0 | {imaging-dev} |
+ milib | 0 | {bio-dev,covid-19} |
+ ncbi-vdb | 0 | {bio-dev} |
+ orthanc-imagej | 0 | {imaging} |
+ pbcopper | 0 | {bio-dev} |
+ pbseqlib | 0 | {bio-dev} |
+ provean | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
+ resfinder-db | 0 | {bio} |
+ sbmltoolbox | 0 | {bio-dev} |
+ simpleitk | 0 | {imaging-dev} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ xdffileio | 0 | {imaging-dev} |
+ xxsds-dynamic | 0 | {bio-dev} |
+ libmaus2 | -1 | {bio-dev,covid-19} |
+ malt | -1 | {bio} |
+ megan-ce | -1 | {bio} |
+ rockhopper | -1 | {bio} |
+ sight | -1 | {imaging-dev} |
+(218 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,2 +1,254 @@
-Last-Update: Sun, 12 Jun 2022 03:36:47 +0000
+Last-Update: Sun, 12 Jun 2022 13:42:04 +0000
+
+ Source | Vote | Tasks | Tags
+-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
+ gts | 2927 | {viewing} |
+ sympy | 1852 | {nanoscale-physics,physics} |
+ armadillo | 191 | {mathematics-dev} |
+ suitesparse | 142 | {mathematics-dev,numericalcomputation} |
+ python-pyqtgraph | 137 | {viewing} |
+ atlas | 88 | {mathematics-dev} |
+ nltk | 77 | {linguistics} |
+ arpack | 68 | {mathematics-dev} |
+ pyzo | 51 | {numericalcomputation} |
+ cypari2 | 48 | {mathematics-dev} |
+ imview | 46 | {viewing} |
+ arduino-mk | 40 | {robotics} |
+ fftw | 36 | {physics-dev,mathematics-dev,meteorology-dev} |
+ flintqs | 36 | {mathematics} |
+ rubiks | 36 | {geometry,mathematics} |
+ eclib | 35 | {mathematics} |
+ sketch | 26 | {typesetting} |
+ feedgnuplot | 23 | {viewing} |
+ cernlib | 21 | {highenergy-physics} |
+ bossa | 20 | {devices} |
+ flann | 19 | {mathematics-dev,engineering-dev} |
+ fftw | 18 | {meteorology-dev,mathematics-dev,physics-dev} |
+ geg | 18 | {viewing} |
+ neuron | 18 | {simulations,highenergy-physics,neuroscience-modeling} |
+ vitables | 18 | {numericalcomputation} |
+ cernlib | 16 | {highenergy-physics-dev} |
+ gts | 16 | {viewing-dev} |
+ libmatio | 16 | {mathematics-dev} |
+ opencascade | 15 | {simulations} |
+ ppl | 15 | {numericalcomputation} |
+ form | 14 | {mathematics} |
+ guidata | 14 | {dataacquisition-dev} |
+ mathgl | 14 | {viewing} |
+ ntl | 14 | {mathematics-dev} |
+ picosat | 14 | {logic} |
+ auto-07p | 13 | {mathematics} |
+ coinor-symphony | 13 | {logic,numericalcomputation,mathematics} |
+ scalapack | 13 | {nanoscale-physics-dev} |
+ getdp | 12 | {engineering,simulations,mathematics} |
+ gfsview | 12 | {viewing} |
+ guiqwt | 12 | {viewing,numericalcomputation} |
+ neuron | 12 | {highenergy-physics-dev} |
+ opticalraytracer | 12 | {physics} |
+ polylib | 12 | {mathematics} |
+ libm4ri | 11 | {mathematics-dev} |
+ ros-ros-environment | 11 | {robotics-dev} |
+ apophenia | 10 | {statistics} |
+ cliquer | 10 | {mathematics} |
+ debian-science | 10 | {mathematics,economics,machine-learning,physics,nanoscale-physics} |
+ dune-uggrid | 10 | {mathematics-dev} |
+ ipe-tools | 10 | {typesetting} |
+ pcl | 10 | {robotics-dev} |
+ rheolef | 10 | {mathematics} |
+ syrthes | 10 | {engineering} |
+ debian-science | 9 | {economics,statistics,nanoscale-physics,physics} |
+ libcgns | 9 | {engineering} |
+ lxi-tools | 9 | {dataacquisition,engineering} |
+ scram | 9 | {engineering} |
+ tango | 9 | {dataacquisition} |
+ uctodata | 9 | {linguistics} |
+ alberta | 8 | {engineering-dev} |
+ debian-science | 8 | {neuroscience-cognitive,machine-learning} |
+ jeuclid | 8 | {typesetting,viewing} |
+ libm4rie | 8 | {mathematics-dev} |
+ lrcalc | 8 | {mathematics} |
+ python-escript | 8 | {numericalcomputation,simulations,engineering} |
+ ros-rosconsole | 8 | {robotics-dev} |
+ toulbar2 | 8 | {logic,numericalcomputation,mathematics,physics} |
+ ucto | 8 | {linguistics} |
+ cliquer | 7 | {mathematics-dev} |
+ iml | 7 | {mathematics-dev} |
+ libitpp | 7 | {engineering-dev,mathematics-dev} |
+ libmatheval | 7 | {mathematics} |
+ libzn-poly | 7 | {mathematics-dev} |
+ matlab-support | 7 | {numericalcomputation,mathematics} |
+ opencascade | 7 | {simulations} |
+ code-saturne | 6 | {mathematics-dev,engineering-dev} |
+ debian-science | 6 | {economics,physics,nanoscale-physics,machine-learning} |
+ dxflib | 6 | {engineering-dev} |
+ dxsamples | 6 | {nanoscale-physics} |
+ eclib | 6 | {mathematics-dev} |
+ libhomfly | 6 | {mathematics-dev} |
+ libvigraimpex | 6 | {imageanalysis-dev,machine-learning} |
+ urdfdom-headers | 6 | {robotics-dev} |
+ cimg | 5 | {imageanalysis-dev} | {x11::library}
+ coinmp | 5 | {mathematics-dev,logic,numericalcomputation} |
+ dune-istl | 5 | {mathematics-dev} |
+ frog | 5 | {linguistics} |
+ gf2x | 5 | {mathematics-dev} |
+ ipe-tools | 5 | {typesetting} |
+ irstlm | 5 | {linguistics} |
+ lrcalc | 5 | {mathematics-dev} |
+ muparser | 5 | {mathematics-dev} |
+ qd | 5 | {mathematics-dev} |
+ sac2mseed | 5 | {geography} |
+ tango | 5 | {dataacquisition} |
+ teem | 5 | {imageanalysis} |
+ apertium-streamparser | 4 | {linguistics} |
+ astk | 4 | {engineering} |
+ cbflib | 4 | {nanoscale-physics} |
+ debian-science | 4 | {tools} |
+ debian-science | 4 | {electrophysiology} |
+ dimbl | 4 | {linguistics} |
+ etsf-io | 4 | {nanoscale-physics,physics} |
+ harp | 4 | {meteorology} |
+ hpcc | 4 | {distributedcomputing,numericalcomputation} |
+ libcgns | 4 | {engineering-dev} |
+ libgetdata | 4 | {dataacquisition} |
+ libmatheval | 4 | {mathematics-dev} |
+ psurface | 4 | {numericalcomputation} |
+ ratpoints | 4 | {mathematics-dev} |
+ taurus | 4 | {dataacquisition} |
+ timbl | 4 | {linguistics} |
+ timblserver | 4 | {linguistics} |
+ cernlib | 3 | {highenergy-physics} |
+ coda | 3 | {meteorology-dev} |
+ code-saturne | 3 | {engineering-dev,mathematics-dev} |
+ debian-science | 3 | {psychophysics} |
+ debian-science | 3 | {nanoscale-physics-dev} |
+ debian-science | 3 | {economics} |
+ fastjet | 3 | {highenergy-physics-dev} |
+ jhdf | 3 | {engineering-dev} |
+ jhdf | 3 | {engineering} |
+ libgetdata | 3 | {dataacquisition-dev} |
+ libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
+ looptools | 3 | {highenergy-physics} |
+ mbt | 3 | {linguistics} |
+ metis-edf | 3 | {engineering,numericalcomputation} |
+ morse-simulator | 3 | {robotics} |
+ neuron | 3 | {highenergy-physics-dev} |
+ newmat | 3 | {mathematics-dev} |
+ openmx | 3 | {nanoscale-physics,physics} |
+ openstereogram | 3 | {tools} |
+ qwtplot3d | 3 | {viewing-dev} |
+ ros-opencv-apps | 3 | {robotics} |
+ sardana | 3 | {dataacquisition} |
+ x13as | 3 | {economics} |
+ apophenia | 2 | {statistics} |
+ cbflib | 2 | {nanoscale-physics-dev} |
+ cernlib | 2 | {highenergy-physics} |
+ cld2 | 2 | {linguistics} |
+ clhep | 2 | {highenergy-physics-dev} |
+ coda | 2 | {meteorology} |
+ cqrlib | 2 | {mathematics-dev} |
+ cvector | 2 | {mathematics-dev} |
+ debian-science | 2 | {neuroscience-cognitive} |
+ debian-science | 2 | {physics} |
+ dune-localfunctions | 2 | {mathematics-dev} |
+ gemmlowp | 2 | {mathematics-dev} |
+ itsol | 2 | {mathematics-dev} |
+ libgetdata | 2 | {dataacquisition-dev} |
+ liblbfgs | 2 | {mathematics-dev} |
+ libvigraimpex | 2 | {imageanalysis-dev,machine-learning} |
+ looptools | 2 | {highenergy-physics-dev} |
+ mbtserver | 2 | {linguistics} |
+ neartree | 2 | {numericalcomputation,mathematics-dev} |
+ simbody | 2 | {robotics-dev} |
+ sparskit | 2 | {mathematics-dev} |
+ tango | 2 | {dataacquisition-dev} |
+ apriltag | 1 | {robotics-dev} |
+ asl | 1 | {physics-dev} |
+ cernlib | 1 | {highenergy-physics} |
+ clipper | 1 | {nanoscale-physics-dev} |
+ coda | 1 | {meteorology-dev} |
+ collada-dom | 1 | {viewing-dev} |
+ frogdata | 1 | {linguistics} |
+ libccp4 | 1 | {nanoscale-physics-dev} |
+ libdogleg | 1 | {mathematics-dev} |
+ liblxi | 1 | {engineering-dev,dataacquisition-dev} |
+ liborigin2 | 1 | {viewing-dev} |
+ libxsmm | 1 | {mathematics-dev} |
+ mrmpi | 1 | {tools} |
+ ompl | 1 | {robotics-dev} |
+ openigtlink | 1 | {robotics-dev} |
+ openturns | 1 | {statistics,engineering,meteorology,mathematics,mathematics-dev,meteorology-dev} |
+ pycollada | 1 | {engineering-dev} |
+ pynac | 1 | {mathematics-dev} |
+ python-aws-xray-sdk | 1 | {dataacquisition-dev} |
+ quadrule | 1 | {mathematics-dev} |
+ ssm | 1 | {nanoscale-physics} |
+ tamuanova | 1 | {statistics} |
+ tango | 1 | {dataacquisition} |
+ tango | 1 | {dataacquisition-dev} |
+ apertium-afr-nld | 0 | {linguistics} |
+ apertium-bel-rus | 0 | {linguistics} |
+ apertium-en-es | 0 | {linguistics} |
+ apertium-es-ast | 0 | {linguistics} |
+ apertium-hin | 0 | {linguistics} |
+ apertium-isl | 0 | {linguistics} |
+ apertium-is-sv | 0 | {linguistics} |
+ apertium-ita | 0 | {linguistics} |
+ apertium-mk-bg | 0 | {linguistics} |
+ apertium-mlt-ara | 0 | {linguistics} |
+ apertium-nno-nob | 0 | {linguistics} |
+ apertium-por-cat | 0 | {linguistics} |
+ apertium-sme-nob | 0 | {linguistics} |
+ apertium-spa | 0 | {linguistics} |
+ apertium-swe-dan | 0 | {linguistics} |
+ apertium-swe-nor | 0 | {linguistics} |
+ apertium-urd | 0 | {linguistics} |
+ apertium-urd-hin | 0 | {linguistics} |
+ calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
+ calculix-ccx-test | 0 | {simulations,numericalcomputation,engineering} |
+ cernlib | 0 | {highenergy-physics} |
+ cernlib | 0 | {highenergy-physics,physics} |
+ cernlib | 0 | {highenergy-physics-dev} |
+ ckon | 0 | {highenergy-physics-dev} |
+ clhep | 0 | {highenergy-physics-dev} |
+ coda | 0 | {meteorology-dev} |
+ code-saturne | 0 | {engineering} |
+ dune-functions | 0 | {mathematics-dev} |
+ dune-grid-glue | 0 | {mathematics-dev} |
+ dune-pdelab | 0 | {mathematics-dev} |
+ dune-typetree | 0 | {mathematics-dev} |
+ etsf-io | 0 | {nanoscale-physics-dev} |
+ fastjet | 0 | {highenergy-physics-dev} |
+ glpk-java | 0 | {mathematics-dev} |
+ libfolia | 0 | {linguistics} |
+ libgetdata | 0 | {dataacquisition-dev} |
+ libquantum | 0 | {numericalcomputation} |
+ librsl | 0 | {meteorology-dev} |
+ libsdsl | 0 | {dataacquisition-dev} |
+ looptools | 0 | {highenergy-physics-dev} |
+ mclibs | 0 | {highenergy-physics} |
+ metis-edf | 0 | {engineering-dev} |
+ ompl | 0 | {robotics} |
+ openctm | 0 | {physics-dev} |
+ openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
+ openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
+ psurface | 0 | {numericalcomputation} |
+ python-escript | 0 | {engineering,simulations,numericalcomputation} |
+ qrupdate | 0 | {mathematics-dev} |
+ robot-testing-framework | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
+ ros-metapackages | 0 | {robotics-dev} |
+ sagemath-database-combinatorial-designs | 0 | {mathematics} |
+ sagemath-database-conway-polynomials | 0 | {mathematics} |
+ sagemath-database-elliptic-curves | 0 | {mathematics} |
+ sagemath-database-graphs | 0 | {mathematics} |
+ sagemath-database-polytopes | 0 | {mathematics} |
+ siscone | 0 | {highenergy-physics-dev} |
+ slicot | 0 | {engineering-dev,robotics-dev} |
+ ssm | 0 | {nanoscale-physics-dev} |
+ tachyon | 0 | {mathematics} |
+ triangle | 0 | {physics-dev} |
+ trilinos | 0 | {engineering-dev,physics-dev,mathematics-dev} |
+ visp-images | 0 | {robotics-dev} |
+ vlfeat | 0 | {imageanalysis-dev} |
+(282 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/eb7ec4ac6c77c98202db3f0ce4dffe0ec65fe05f
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