[med-svn] [Git][med-team/augur][upstream] New upstream version 16.0.1

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / augur


Commits:
4bd42a6b by Étienne Mollier at 2022-06-24T22:17:16+02:00
New upstream version 16.0.1
- - - - -


30 changed files:

- .github/workflows/ci.yaml
- .github/workflows/release.yaml
- CHANGES.md
- augur/__init__.py
- augur/__version__.py
- augur/align.py
- augur/data/lat_longs.tsv
- augur/data/schema-auspice-config-v2.json
- augur/data/schema-export-v2.json
- + augur/data/schema-measurements-collection-config.json
- augur/dates.py
- + augur/errors.py
- augur/export_v1.py
- augur/export_v2.py
- augur/filter.py
- augur/frequencies.py
- augur/index.py
- + augur/io/__init__.py
- + augur/io/file.py
- augur/io.py → augur/io/metadata.py
- + augur/io/print.py
- + augur/io/sequences.py
- augur/util_support/shell_command_runner.py → augur/io/shell_command_runner.py
- + augur/io/vcf.py
- + augur/io_support/__init__.py
- augur/mask.py
- + augur/measurements.py
- augur/parse.py
- augur/refine.py
- augur/titer_model.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augur/-/commit/4bd42a6bbd3dbac22b200fc3260da930bf889491

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