[med-svn] [Git][med-team/nanopolish][master] 7 commits: New upstream version 0.14.0

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / nanopolish


Commits:
c9c51e43 by Andreas Tille at 2022-06-29T17:50:34+02:00
New upstream version 0.14.0
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9918dd6c by Andreas Tille at 2022-06-29T17:50:34+02:00
routine-update: New upstream version

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a38f0b7a by Andreas Tille at 2022-06-29T17:50:42+02:00
Update upstream source from tag 'upstream/0.14.0'

Update to upstream version '0.14.0'
with Debian dir 8163ed3a3e31eabf8cae09aef5b0ecd4e4068cfc
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3ec8889a by Andreas Tille at 2022-06-29T17:50:42+02:00
routine-update: Standards-Version: 4.6.1

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bf54bd9e by Andreas Tille at 2022-06-29T17:58:47+02:00
Drop unneeded version constraint

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b93f6a33 by Andreas Tille at 2022-06-29T17:58:58+02:00
Update patches

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d81f080e by Andreas Tille at 2022-06-29T20:31:06+02:00
TODO: https://github.com/hasindu2008/slow5lib

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30 changed files:

- + .github/workflows/nanopolish.yaml
- .gitmodules
- Makefile
- README.md
- debian/changelog
- debian/control
- debian/patches/reproducible.patch
- debian/patches/staticMinimap2Library.patch
- + etc/htslib_config.h
- + src/basemods/nanopolish_basemods.cpp
- + src/basemods/nanopolish_basemods.h
- src/common/nanopolish_alphabet.h
- src/common/nanopolish_bam_processor.cpp
- src/common/nanopolish_bam_processor.h
- src/common/nanopolish_common.cpp
- src/common/nanopolish_common.h
- src/common/nanopolish_variant.cpp
- src/io/nanopolish_fast5_loader.cpp
- src/io/nanopolish_fast5_loader.h
- src/main/nanopolish.cpp
- src/nanopolish_call_methylation.cpp
- src/nanopolish_detect_polyi.cpp
- − src/nanopolish_extract.cpp
- − src/nanopolish_extract.h
- src/nanopolish_fast5_check.cpp
- − src/nanopolish_getmodel.cpp
- − src/nanopolish_getmodel.h
- src/nanopolish_index.cpp
- src/nanopolish_phase_reads.cpp
- src/nanopolish_polya_estimator.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/b2e8af881fed45a8c3d668d13c0e75cb87be2cc7...d81f080eed43ef64eb86a0e7561b803f7b8d1191

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View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/b2e8af881fed45a8c3d668d13c0e75cb87be2cc7...d81f080eed43ef64eb86a0e7561b803f7b8d1191
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