[med-svn] [Git][med-team/flye][upstream] New upstream version 2.9+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / flye


Commits:
4d268e56 by Andreas Tille at 2022-05-05T10:12:24+02:00
New upstream version 2.9+dfsg
- - - - -


30 changed files:

- README.md
- docs/FAQ.md
- docs/INSTALL.md
- docs/NEWS.md
- docs/USAGE.md
- flye/__build__.py
- flye/__version__.py
- flye/assembly/assemble.py
- flye/assembly/repeat_graph.py
- flye/assembly/scaffolder.py
- flye/config/bin_cfg/asm_corrected_reads.cfg
- flye/config/bin_cfg/asm_defaults.cfg
- flye/config/bin_cfg/asm_hifi.cfg
- + flye/config/bin_cfg/asm_nano_hq.cfg
- flye/config/bin_cfg/asm_raw_reads.cfg
- flye/config/bin_cfg/asm_subasm.cfg
- − flye/config/bin_cfg/nano_r7_homopolymers.mat
- − flye/config/bin_cfg/nano_r7_substitutions.mat
- + flye/config/bin_cfg/nano_r94_g36_homopolymers.mat
- + flye/config/bin_cfg/nano_r94_g36_substitutions.mat
- + flye/config/bin_cfg/pacbio_chm13_homopolymers.mat
- + flye/config/bin_cfg/pacbio_chm13_substitutions.mat
- flye/config/configurator.py
- flye/config/py_cfg.py
- flye/main.py
- flye/polishing/alignment.py
- flye/polishing/bubbles.py
- flye/polishing/consensus.py
- flye/polishing/polish.py
- flye/short_plasmids/plasmids.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/flye/-/commit/4d268e567a619d668f3b915cca5d855232b72394

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