[med-svn] [Git][med-team/mindthegap][master] 4 commits: New upstream version 2.3.0

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / mindthegap


Commits:
b9057443 by Nilesh Patra at 2022-05-29T11:15:30+05:30
New upstream version 2.3.0
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8b35994a by Nilesh Patra at 2022-05-29T11:15:32+05:30
Update upstream source from tag 'upstream/2.3.0'

Update to upstream version '2.3.0'
with Debian dir c5eac33c43b829ab1998d19e8bc2a7dff77d046e
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35d66eb7 by Nilesh Patra at 2022-05-29T11:15:40+05:30
Bump Standards-Version to 4.6.1 (no changes needed)

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03ce3fd9 by Nilesh Patra at 2022-05-29T11:16:17+05:30
Upload to unstable

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30 changed files:

- − .travis.yml
- CHANGELOG.md
- CMakeLists.txt
- README.md
- data/reads_r1.fastq
- data/reads_r2.fastq
- data/reference.fasta
- debian/changelog
- debian/control
- doc/MindTheGap_insertion_caller.md
- scripts/jenkins/tool-mindthegap-build-debian7-64bits-gcc-4.7.sh
- scripts/jenkins/tool-mindthegap-build-macos-10.9.5-gcc-4.2.1.sh
- scripts/jenkins/tool-mindthegap-release-debian.sh
- src/FindBreakpoints.hpp
- src/FindHeteroInsertion.hpp
- src/FindSNP.hpp
- + src/FindSmallInsertion.hpp
- src/Finder.cpp
- src/Finder.hpp
- src/main.cpp
- test/full_test/README
- test/full_test/allele1.fasta
- test/full_test/allele2.fasta
- test/full_test/gold.breakpoints
- test/full_test/gold.insertions.fasta
- test/full_test/gold.insertions.vcf
- test/full_test/gold.othervariants.vcf
- test/full_test/gold_bed.breakpoints
- test/full_test/gold_bed.othervariants.vcf
- test/full_test/gold_fill.output


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mindthegap/-/compare/78d5cb286af69e81d2664a2315dcd2d893bab690...03ce3fd95ce9c95fd86e1b7ae61bb75c7418e381

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View it on GitLab: https://salsa.debian.org/med-team/mindthegap/-/compare/78d5cb286af69e81d2664a2315dcd2d893bab690...03ce3fd95ce9c95fd86e1b7ae61bb75c7418e381
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