[med-svn] [Git][med-team/igv][upstream] New upstream version 2.13.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / igv


Commits:
85e56923 by Pierre Gruet at 2022-05-31T20:51:37+02:00
New upstream version 2.13.0+dfsg
- - - - -


30 changed files:

- README.md
- src/main/java/org/broad/igv/aws/S3LoadDialog.java
- src/main/java/org/broad/igv/batch/CommandExecutor.java
- src/main/java/org/broad/igv/bigwig/BigWigDataSource.java → src/main/java/org/broad/igv/bbfile/BBDataSource.java
- + src/main/java/org/broad/igv/bbfile/BBUtils.java
- + src/main/java/org/broad/igv/bbfile/codecs/BBBedCodec.java
- + src/main/java/org/broad/igv/bbfile/codecs/BBCodec.java
- + src/main/java/org/broad/igv/bbfile/codecs/BBCodecFactory.java
- + src/main/java/org/broad/igv/bbfile/codecs/BBGenePredCodec.java
- + src/main/java/org/broad/igv/bbfile/codecs/BBNarowPeakCodec.java
- src/main/java/org/broad/igv/blast/BlastMapping.java
- src/main/java/org/broad/igv/feature/AbstractFeature.java
- src/main/java/org/broad/igv/feature/BasicFeature.java
- src/main/java/org/broad/igv/feature/Exon.java
- src/main/java/org/broad/igv/feature/FeatureUtils.java
- src/main/java/org/broad/igv/feature/IGVFeature.java
- src/main/java/org/broad/igv/feature/Mutation.java
- src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
- src/main/java/org/broad/igv/feature/UCSCSnpFeature.java
- src/main/java/org/broad/igv/feature/bionano/SMAPFeature.java
- src/main/java/org/broad/igv/feature/bionano/SMAPPairedFeature.java
- src/main/java/org/broad/igv/feature/dranger/DRangerFeature.java
- src/main/java/org/broad/igv/feature/genome/GenomeBuilderDialog.java
- src/main/java/org/broad/igv/feature/genome/load/JsonGenomeLoader.java
- src/main/java/org/broad/igv/feature/tribble/PAFFeature.java
- − src/main/java/org/broad/igv/feature/tribble/VCFFeature.java
- src/main/java/org/broad/igv/google/OAuthProvider.java
- src/main/java/org/broad/igv/google/OAuthUtils.java
- src/main/java/org/broad/igv/gwas/EQTLFeature.java
- src/main/java/org/broad/igv/gwas/GWASParser.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/85e56923ff4185721785847d070dc35b4abe6ca1

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View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/85e56923ff4185721785847d070dc35b4abe6ca1
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