[med-svn] [Git][med-team/salmon][upstream] New upstream version 1.9.0+ds1

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / salmon


Commits:
471a464d by Étienne Mollier at 2022-10-28T18:25:51+02:00
New upstream version 1.9.0+ds1
- - - - -


30 changed files:

- .drone.yml
- .drone/build.sh
- .drone/test_quant.sh
- CMakeLists.txt
- + CONTRIBUTING.md
- README.md
- current_version.txt
- doc/source/conf.py
- doc/source/salmon.rst
- docker/Dockerfile
- docker/build_test.sh
- include/AlignmentLibrary.hpp
- include/AlignmentModel.hpp
- include/AtomicMatrix.hpp
- include/BAMQueue.hpp
- include/FragmentStartPositionDistribution.hpp
- include/GenomicFeature.hpp
- include/MiniBatchInfo.hpp
- include/ONTAlignmentModel.hpp
- include/OutputUnmappedFilter.hpp
- include/SalmonConfig.hpp
- include/SalmonDefaults.hpp
- include/SalmonOpts.hpp
- include/SalmonUtils.hpp
- include/Sampler.hpp
- include/SequenceBiasModel.hpp
- include/WhiteList.hpp
- scripts/fetchPufferfish.sh
- scripts/make-release.sh
- src/BuildSalmonIndex.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/-/commit/471a464d6442e1b0faa504217bf831285b69c85f

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View it on GitLab: https://salsa.debian.org/med-team/salmon/-/commit/471a464d6442e1b0faa504217bf831285b69c85f
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