[med-svn] [Git][med-team/pychopper][master] 13 commits: New upstream version 2.7.2

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / pychopper


Commits:
4f6485e9 by Nilesh Patra at 2022-11-19T17:09:57+05:30
New upstream version 2.7.2
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bae66802 by Nilesh Patra at 2022-11-19T17:11:54+05:30
Update upstream source from tag 'upstream/2.7.2'

Update to upstream version '2.7.2'
with Debian dir 034f69365fe7db306a9adb2d29ec47bf602e9b7c
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0e618dff by Nilesh Patra at 2022-11-19T17:12:04+05:30
Bump Standards-Version to 4.6.1 (no changes needed)

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a3f2e483 by Nilesh Patra at 2022-11-19T17:13:11+05:30
Update fixTests.patch again

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da49ef78 by Nilesh Patra at 2022-11-19T11:54:29+00:00
d/rules: Rename pychopper.py script post build

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3c33ed3b by Nilesh Patra at 2022-11-19T17:33:39+05:30
Add custom d/clean and get rid of some custom removals in d/rules

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102d30ce by Nilesh Patra at 2022-11-19T12:25:47+00:00
d/rules: Run tests inside the custom for loop

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6e679b18 by Nilesh Patra at 2022-11-19T15:05:43+00:00
d/rules: Get tests running

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a9a61734 by Nilesh Patra at 2022-11-19T20:45:36+05:30
Remove exec perm over PCS111_primers.fas

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0f0f0b38 by Nilesh Patra at 2022-11-19T20:51:00+05:30
Prune .gitignore(s) post install

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7e4c1852 by Nilesh Patra at 2022-11-19T20:51:33+05:30
Check for supported versions in autopkgtests

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2e7b4874 by Nilesh Patra at 2022-11-19T20:59:15+05:30
Add python3-edlib to test-deps

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5dfca392 by Nilesh Patra at 2022-11-19T21:07:48+05:30
Upload to unstable

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30 changed files:

- − .circleci/config.yml
- .gitignore
- .gitlab-ci.yml
- + CHANGELOG.md
- Makefile
- + MakefileOld
- README.md
- + conda/meta.yaml
- debian/changelog
- + debian/clean
- debian/control
- debian/patches/fixTests.patch
- debian/rules
- debian/tests/control
- debian/tests/run-unit-test
- evaluation/Makefile
- + evaluation/data/SIRV_E0_pcs109_25k.fq.gz
- pychopper/__init__.py
- pychopper/chopper.py
- pychopper/common_structures.py
- pychopper/edlib_backend.py
- + pychopper/primer_data/PCS111_primers.fas
- scripts/__init__.py → pychopper/scripts/__init__.py
- scripts/cdna_classifier.py → pychopper/scripts/pychopper.py
- pychopper/seq_utils.py
- + pychopper/tests/data/PCS111_umi_test_reads.fastq.gz
- + pychopper/tests/data/PCS111_umi_test_reads_expected.fastq
- − pychopper/tests/data/ref.fas
- + pychopper/tests/data/ref.fas.gz
- − pychopper/tests/data/ref.fq


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pychopper/-/compare/8c63460a93dc39f7251a9d73df7c7fff28017b13...5dfca39215069474f8cd0136a501875bd31c915b

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View it on GitLab: https://salsa.debian.org/med-team/pychopper/-/compare/8c63460a93dc39f7251a9d73df7c7fff28017b13...5dfca39215069474f8cd0136a501875bd31c915b
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